BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0827500 Os02g0827500|J033118I02
         (159 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17820.1  | chr1:6131751-6135115 REVERSE LENGTH=804            110   2e-25
AT1G73200.1  | chr1:27523454-27526573 REVERSE LENGTH=780          103   6e-23

>AT1G17820.1 | chr1:6131751-6135115 REVERSE LENGTH=804
          Length = 803

 Score =  110 bits (276), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 61/68 (89%)

Query: 3   LAQVPLSLAIKISSVRGVLRVHVKPPPSDQLWYGFTSMPDLEWDIESSIGDRKITNSHIG 62
           ++QVP+SL+I++SS+RG LRVH+KPPPSDQLW+GFTSMPD+E+D+ SS+G+ KITNSH+ 
Sbjct: 512 VSQVPISLSIRVSSLRGTLRVHMKPPPSDQLWFGFTSMPDIEFDLASSVGEHKITNSHVA 571

Query: 63  SLIGNRFK 70
             + NRFK
Sbjct: 572 MFLINRFK 579



>AT1G73200.1 | chr1:27523454-27526573 REVERSE LENGTH=780
          Length = 779

 Score =  103 bits (256), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 59/68 (86%)

Query: 3   LAQVPLSLAIKISSVRGVLRVHVKPPPSDQLWYGFTSMPDLEWDIESSIGDRKITNSHIG 62
           ++QVP++L+I +SS+RG L VH+KPPPSDQLW+GFTSMPD+E+++ SS+G+ KITNSH+ 
Sbjct: 515 VSQVPITLSIGVSSLRGTLCVHMKPPPSDQLWFGFTSMPDIEFNLVSSVGEHKITNSHVA 574

Query: 63  SLIGNRFK 70
             + NRFK
Sbjct: 575 MFLVNRFK 582



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,442,157
Number of extensions: 127332
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)