BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0827100 Os02g0827100|AK058935
(40 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20270.1 | chr1:7021383-7022923 REVERSE LENGTH=288 82 5e-17
AT4G35810.1 | chr4:16968921-16970358 FORWARD LENGTH=291 79 6e-16
AT2G17720.1 | chr2:7697513-7699174 FORWARD LENGTH=292 77 2e-15
AT5G66060.1 | chr5:26419481-26421118 FORWARD LENGTH=290 75 7e-15
AT5G18900.1 | chr5:6304409-6306166 REVERSE LENGTH=299 63 3e-11
AT3G06300.1 | chr3:1907744-1909675 FORWARD LENGTH=300 61 9e-11
AT3G28480.2 | chr3:10676266-10678262 REVERSE LENGTH=325 56 3e-09
AT3G28490.1 | chr3:10679150-10680654 REVERSE LENGTH=289 55 7e-09
AT2G43080.1 | chr2:17915755-17918599 FORWARD LENGTH=284 54 1e-08
AT2G23096.1 | chr2:9834766-9836235 REVERSE LENGTH=275 54 2e-08
AT4G33910.1 | chr4:16256943-16258614 REVERSE LENGTH=289 51 1e-07
>AT1G20270.1 | chr1:7021383-7022923 REVERSE LENGTH=288
Length = 287
Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREYK 39
FWSM+PDATLDP SLHGGCPVI+GNKWSSTKWMHV EYK
Sbjct: 248 FWSMRPDATLDPTSLHGGCPVIRGNKWSSTKWMHVGEYK 286
>AT4G35810.1 | chr4:16968921-16970358 FORWARD LENGTH=291
Length = 290
Score = 78.6 bits (192), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 35/38 (92%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREY 38
FWSMKPDA+LDP SLHGGCPVIKGNKWSSTKW HV EY
Sbjct: 252 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWFHVHEY 289
>AT2G17720.1 | chr2:7697513-7699174 FORWARD LENGTH=292
Length = 291
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 36/40 (90%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREYKA 40
FW+M+PDA+LDP SLHGGCPV+KGNKWSSTKW HV E+K
Sbjct: 252 FWNMRPDASLDPSSLHGGCPVVKGNKWSSTKWFHVHEFKV 291
>AT5G66060.1 | chr5:26419481-26421118 FORWARD LENGTH=290
Length = 289
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 34/40 (85%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREYKA 40
FWSM PDATLDP SLHGGC VIKGNKWSSTKW+ V EYK
Sbjct: 250 FWSMTPDATLDPSSLHGGCAVIKGNKWSSTKWLRVHEYKV 289
>AT5G18900.1 | chr5:6304409-6306166 REVERSE LENGTH=299
Length = 298
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREY 38
F+++ PDA DPLSLHGGCPVI+G KWS+TKW+HV +
Sbjct: 211 FFNLHPDAIPDPLSLHGGCPVIEGEKWSATKWIHVDSF 248
>AT3G06300.1 | chr3:1907744-1909675 FORWARD LENGTH=300
Length = 299
Score = 61.2 bits (147), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREY 38
F++++ DA DP SLHGGCPVI+G KWS+TKW+HV +
Sbjct: 212 FFNLQQDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSF 249
>AT3G28480.2 | chr3:10676266-10678262 REVERSE LENGTH=325
Length = 324
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 32/39 (82%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREYK 39
F+++ P+AT D SLHG CPV++G KWS+T+W+HV+ ++
Sbjct: 235 FFNLHPNATTDSNSLHGSCPVVEGEKWSATRWIHVKSFE 273
>AT3G28490.1 | chr3:10679150-10680654 REVERSE LENGTH=289
Length = 288
Score = 55.1 bits (131), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREY 38
F+++ + T DP SLHG CPVI+G KWS+T+W+HVR +
Sbjct: 204 FFNLHLNGTTDPNSLHGSCPVIEGEKWSATRWIHVRSF 241
>AT2G43080.1 | chr2:17915755-17918599 FORWARD LENGTH=284
Length = 283
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWM 33
FWSM D DP S+HGGC V+ G KWS+TKWM
Sbjct: 245 FWSMGLDGQSDPRSIHGGCEVLSGEKWSATKWM 277
>AT2G23096.1 | chr2:9834766-9836235 REVERSE LENGTH=275
Length = 274
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWMHVREY 38
F+++ P+ T+D SLHG CPVIKG KW +TKW+ + Y
Sbjct: 236 FYNLFPNGTIDQTSLHGSCPVIKGEKWVATKWIRDQTY 273
>AT4G33910.1 | chr4:16256943-16258614 REVERSE LENGTH=289
Length = 288
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 1 FWSMKPDATLDPLSLHGGCPVIKGNKWSSTKWM 33
F+S+ P+ T+D SLHG CPV KG KW +TKW+
Sbjct: 249 FYSVFPNGTIDQTSLHGSCPVTKGEKWVATKWI 281
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,157,010
Number of extensions: 27708
Number of successful extensions: 73
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 11
Length of query: 40
Length of database: 11,106,569
Length adjustment: 14
Effective length of query: 26
Effective length of database: 10,722,745
Effective search space: 278791370
Effective search space used: 278791370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)