BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0825600 Os02g0825600|AK066738
(169 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24520.1 | chr2:10415522-10419730 FORWARD LENGTH=932 69 1e-12
AT3G47950.1 | chr3:17693015-17697801 FORWARD LENGTH=961 67 6e-12
AT5G62670.1 | chr5:25159495-25164957 FORWARD LENGTH=957 67 6e-12
AT5G57350.1 | chr5:23231208-23236381 REVERSE LENGTH=950 66 1e-11
AT1G80660.1 | chr1:30316227-30319948 REVERSE LENGTH=955 65 1e-11
AT3G60330.1 | chr3:22298763-22303509 FORWARD LENGTH=962 64 4e-11
AT4G30190.2 | chr4:14770820-14775920 REVERSE LENGTH=982 64 4e-11
AT3G42640.1 | chr3:14724309-14728062 FORWARD LENGTH=949 61 3e-10
AT2G18960.1 | chr2:8221858-8227268 FORWARD LENGTH=950 61 3e-10
AT1G17260.1 | chr1:5904058-5908898 FORWARD LENGTH=948 60 4e-10
AT2G07560.1 | chr2:3170394-3173952 REVERSE LENGTH=950 60 5e-10
>AT2G24520.1 | chr2:10415522-10419730 FORWARD LENGTH=932
Length = 931
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESK---FLRFMWNPLSWVMEXXXXXXXXXXNGGG 154
LT+ A L++FGPNKL+EKKESK FL FMWNPLSWVME NGGG
Sbjct: 15 LTANEASHRLDVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEVAALMAIALANGGG 70
>AT3G47950.1 | chr3:17693015-17697801 FORWARD LENGTH=961
Length = 960
Score = 66.6 bits (161), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESKFLRF---MWNPLSWVMEXXXXXXXXXXNGGG 154
LT+ A++ L LFG NKL+EKKESKFL+F MWNPLSWVME NGGG
Sbjct: 41 LTTQAADERLALFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGG 96
>AT5G62670.1 | chr5:25159495-25164957 FORWARD LENGTH=957
Length = 956
Score = 66.6 bits (161), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESKFLRF---MWNPLSWVMEXXXXXXXXXXNGGG 154
LT+ A++ L LFG NKL+EKKESKFL+F MWNPLSWVME NGGG
Sbjct: 37 LTTEAADERLALFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGG 92
>AT5G57350.1 | chr5:23231208-23236381 REVERSE LENGTH=950
Length = 949
Score = 65.9 bits (159), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESK---FLRFMWNPLSWVMEXXXXXXXXXXNGGG 154
L+ E L +FGPNKL+EKKESK FL FMWNPLSWVME NGGG
Sbjct: 34 LSGAEGENRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGG 89
>AT1G80660.1 | chr1:30316227-30319948 REVERSE LENGTH=955
Length = 954
Score = 65.5 bits (158), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESK---FLRFMWNPLSWVMEXXXXXXXXXXNGGG 154
LTS + L +FGPNKL+EKKE+K FL FMWNPLSWVME NGGG
Sbjct: 38 LTSDEGQTRLEIFGPNKLEEKKENKVLKFLGFMWNPLSWVMELAAIMAIALANGGG 93
>AT3G60330.1 | chr3:22298763-22303509 FORWARD LENGTH=962
Length = 961
Score = 63.9 bits (154), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESK---FLRFMWNPLSWVMEXXXXXXXXXXNGGG 154
LTS ++ L LFG NKL+EKKESK FL FMWNPLSWVME +GGG
Sbjct: 36 LTSNEVQERLTLFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIGLAHGGG 91
>AT4G30190.2 | chr4:14770820-14775920 REVERSE LENGTH=982
Length = 981
Score = 63.9 bits (154), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESK---FLRFMWNPLSWVMEXXXXXXXXXXNGGG 154
LT+ E + +FGPNKL+EKKESK FL FMWNPLSWVME NG G
Sbjct: 33 LTTQEGEDRIQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDG 88
>AT3G42640.1 | chr3:14724309-14728062 FORWARD LENGTH=949
Length = 948
Score = 61.2 bits (147), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESKFLRF---MWNPLSWVMEXXXXXXXXXXNGGG 154
L+S + L +FG NKL+EK E+KFL+F MWNPLSWVME NGGG
Sbjct: 36 LSSDEGAKRLEIFGANKLEEKSENKFLKFLGFMWNPLSWVMESAAIMAIVLANGGG 91
>AT2G18960.1 | chr2:8221858-8227268 FORWARD LENGTH=950
Length = 949
Score = 60.8 bits (146), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESK---FLRFMWNPLSWVMEXXXXXXXXXXNG 152
LT+ E + +FGPNKL+EKKESK FL FMWNPLSWVME NG
Sbjct: 33 LTTQEGEDRIVIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIALANG 86
>AT1G17260.1 | chr1:5904058-5908898 FORWARD LENGTH=948
Length = 947
Score = 60.5 bits (145), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 3/42 (7%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKES---KFLRFMWNPLSWVME 140
L S +AE+ L +FGPN+L+EK+E+ KFL FMWNPLSWVME
Sbjct: 41 LLSGDAEERLKIFGPNRLEEKQENRFVKFLGFMWNPLSWVME 82
>AT2G07560.1 | chr2:3170394-3173952 REVERSE LENGTH=950
Length = 949
Score = 60.5 bits (145), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESKFLRF---MWNPLSWVMEXXXXXXXXXXNGGG 154
L+S L +FG NKL+EK E+KFL+F MWNPLSWVME NGGG
Sbjct: 36 LSSEEGRNRLQIFGANKLEEKVENKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGG 91
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.126 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,695,189
Number of extensions: 47474
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 11
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)