BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0824700 Os02g0824700|009-023-E06
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02620.1  | chr4:1149419-1151132 REVERSE LENGTH=129            227   1e-60

>AT4G02620.1 | chr4:1149419-1151132 REVERSE LENGTH=129
          Length = 128

 Score =  227 bits (579), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 121/126 (96%)

Query: 1   MAGRPSIPTNSSALIAIIADEDTVTGFLLAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFK 60
           MAGR +IP  +SALIA+IADEDTV GFL+AGVGNVD+R+KTNYLIVD+KTTV+QIEDAFK
Sbjct: 1   MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFK 60

Query: 61  EFTTREDIAIVLISQYVANMIRFLVDSYNRPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120
           EF+ R+DIAI+L+SQY+ANMIRFLVDSYN+PVPAILEIPSKDHPYDPAHDSVLSRVKYLF
Sbjct: 61  EFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SAESVA 126
           SAESV+
Sbjct: 121 SAESVS 126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,564,056
Number of extensions: 94568
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)