BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0822200 Os02g0822200|AK058380
(331 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65650.1 | chr1:24415172-24417466 REVERSE LENGTH=331 471 e-133
AT5G16310.1 | chr5:5342579-5344153 REVERSE LENGTH=335 416 e-116
AT4G17510.1 | chr4:9767114-9768648 REVERSE LENGTH=235 73 2e-13
>AT1G65650.1 | chr1:24415172-24417466 REVERSE LENGTH=331
Length = 330
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/330 (71%), Positives = 269/330 (81%), Gaps = 3/330 (0%)
Query: 1 MSWCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSISELRPVYGLIFLFKWMAGEKDE 60
MSWCTIESDPGVFTELIQ+MQVKGVQVEELYSLD DS++ LRPVYGLIFLFKW AGEKDE
Sbjct: 1 MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDSDSLNNLRPVYGLIFLFKWQAGEKDE 60
Query: 61 RPVVKDPNPNLFFASQVIPNACATQAILSILMNRPEIDIGPELSNLKEFTGAFAPDMKGL 120
RP ++D NLFFA+QVI NACATQAIL+IL+N PE+DIGPELS LKEFT F D+KGL
Sbjct: 61 RPTIQDQVSNLFFANQVINNACATQAILAILLNSPEVDIGPELSALKEFTKNFPSDLKGL 120
Query: 121 AINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELDGLKEGPIS 180
AINNSDSIR AHNSFARPEPFV +EQ+AA KDD+VYHFISY+P +GVLYELDGLKEGPIS
Sbjct: 121 AINNSDSIRAAHNSFARPEPFVPEEQKAATKDDDVYHFISYIPVDGVLYELDGLKEGPIS 180
Query: 181 LGQCSGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAIIKNRKDVYTAELKELEKRRD 240
LG C G ++WL+MVQPVIQ+RIERYSQSEIRFNL+A+IKNRKD+YTAELKEL+++R+
Sbjct: 181 LGPCPGDQTGIEWLQMVQPVIQERIERYSQSEIRFNLLAVIKNRKDIYTAELKELQRQRE 240
Query: 241 QLLQEMXX---XXXXXXXXXXXXXVTSAIETVSXXXXXXXXXXXXWRTENIRRKHNYIPF 297
QLLQ+ V S IE S WRTENIRRKHNYIPF
Sbjct: 241 QLLQQANTCVDKSEAEAVNALIAEVGSGIEAASDKIVMEEEKFMKWRTENIRRKHNYIPF 300
Query: 298 LFNFLKMLAEKKQLKPLVEKAKQQKASSTS 327
LFNFLK+LAEKKQLKPL+EKAK+QK S++
Sbjct: 301 LFNFLKLLAEKKQLKPLIEKAKKQKTESST 330
>AT5G16310.1 | chr5:5342579-5344153 REVERSE LENGTH=335
Length = 334
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/331 (59%), Positives = 252/331 (76%), Gaps = 14/331 (4%)
Query: 1 MSWCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSISELRPVYGLIFLFKWMAGEKDE 60
MSW +ESDPG+FTE+IQ+MQVKGVQVEELYSLD +S+ E+RPVYGLI L+KW EK+
Sbjct: 1 MSWLPVESDPGIFTEIIQQMQVKGVQVEELYSLDFNSLDEIRPVYGLILLYKWRPEEKEN 60
Query: 61 RPVVKDPNPNLFFASQVIPNACATQAILSILMNRPEIDIGPELSNLKEFTGAFAPDMKGL 120
R V+ +PNPN FFASQ+I NACATQAILS+LMN IDIG ELS LK+F F P++KGL
Sbjct: 61 RVVITEPNPNFFFASQIINNACATQAILSVLMNSSSIDIGSELSELKQFAKEFPPELKGL 120
Query: 121 AINNSDSIRTAHNSFARPEP--FVSDEQRAAGK----DDEVYHFISYLPFEGVLYELDGL 174
AINN+++IR AHN+FARP+P + DE+ AA K DD+VYH+ISYLP +G+LYELDGL
Sbjct: 121 AINNNEAIRAAHNTFARPDPSSIMEDEELAAAKNLDEDDDVYHYISYLPVDGILYELDGL 180
Query: 175 KEGPISLGQCSGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAIIKNRKDVYTAELKE 234
KEGPISLGQC G P+ ++WLRMVQPV+Q++I+RYSQ+EIRF+L+A++KNRK++Y AELKE
Sbjct: 181 KEGPISLGQCLGEPEGIEWLRMVQPVVQEQIDRYSQNEIRFSLLAVVKNRKEMYVAELKE 240
Query: 235 LEKRRDQLLQEMXXXXXXXXXXXXX--------XXVTSAIETVSXXXXXXXXXXXXWRTE 286
+++R+++LQ++ V IETVS W+ E
Sbjct: 241 YQRKRERVLQQLGALQADKYAEKSSYEALDRELSEVNIGIETVSQKIVMEEEKSKNWKKE 300
Query: 287 NIRRKHNYIPFLFNFLKMLAEKKQLKPLVEK 317
N+RRKHNY+PFLFNFLK+LA+KK+LKPL+ K
Sbjct: 301 NMRRKHNYVPFLFNFLKILADKKKLKPLIAK 331
>AT4G17510.1 | chr4:9767114-9768648 REVERSE LENGTH=235
Length = 234
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 28/234 (11%)
Query: 3 WCTIESDPGVFTELIQEMQVKGVQVE--ELYSLDVDSISEL--RPVYGLIFLFKWMAGEK 58
W +ES+P V + + + + + E ++Y LD D + E+ +PV ++FL+ +
Sbjct: 13 WLPLESNPDVMNQYLWGLGLAPDEAECNDVYGLD-DELLEMVPKPVLAVLFLYPITKKSE 71
Query: 59 DERPVVKDP-------NPNLFFASQVIPNACATQAILSILMN-RPEIDI--GPELSNLKE 108
+ER + +D + ++F Q + NAC T +L + N EI + G L +
Sbjct: 72 EER-IEQDKEIKEKVHSDKVYFMKQTVGNACGTIGLLHAIGNITSEIKLSDGSFLDRFFK 130
Query: 109 FTGAFAPDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVL 168
T P + + N I AH+ ++ + A+ +D HFI EG L
Sbjct: 131 STANMTPMERAKFLENDSQIEDAHSV-----AVIAGDTPAS--EDADTHFICLACVEGEL 183
Query: 169 YELDGLKEGPISLGQCSGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAIIK 222
YELDG K GPIS G S P L L+ VI+K IE+ S + FNL+AI K
Sbjct: 184 YELDGRKAGPISHGASS--PATL--LKDATKVIKKMIEKNPGS-LNFNLIAISK 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,441,463
Number of extensions: 262054
Number of successful extensions: 632
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,392,385
Effective search space: 1947033320
Effective search space used: 1947033320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)