BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0822000 Os02g0822000|AK062205
(428 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G52430.1 | chr5:21283093-21285045 REVERSE LENGTH=439 202 3e-52
AT4G25620.1 | chr4:13067447-13069296 REVERSE LENGTH=450 187 1e-47
AT1G63720.1 | chr1:23636122-23637348 REVERSE LENGTH=359 137 9e-33
AT1G76660.1 | chr1:28769157-28771036 REVERSE LENGTH=432 124 1e-28
>AT5G52430.1 | chr5:21283093-21285045 REVERSE LENGTH=439
Length = 438
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 168/478 (35%), Positives = 222/478 (46%), Gaps = 103/478 (21%)
Query: 10 VHNSXXXXXXXXXXXXXXESRTQPQAEPRRKWADWLSVYFCFGSQKNGRRISHAVLVPEP 69
V+NS ESR QP + + +W S+Y CFG+QKN +RI +AVLVPEP
Sbjct: 5 VNNSVETVNAAATAIVTAESRVQPSSSQKGRWGKCWSLYSCFGTQKNNKRIGNAVLVPEP 64
Query: 70 LPPRTDAPMPEIPIHXXXXXXXXXXXX----XXXXXXLQSGGASIVQSPVGAXXXXXXXX 125
+ + +P + + LQS +S+ SPVG
Sbjct: 65 V----TSGVPVVTVQNSATSTTVVLPFIAPPSSPASFLQSDPSSVSHSPVGPLSLTSNTF 120
Query: 126 XXXXXXXXXXIFAIGPYAHETQLVSPPVFSAFTTEPSTAPFTPPPE-SVHLTTPSSPEVP 184
+F +GPYA+ETQ V+PPVFSAF TEPSTAP+TPPPE SVH+TTPSSPEVP
Sbjct: 121 SPKEPQS---VFTVGPYANETQPVTPPVFSAFITEPSTAPYTPPPESSVHITTPSSPEVP 177
Query: 185 YAKLLTS------------INNSKNAETGELQSYQIYPESP-IGRLISPSSAC--SGTCS 229
+A+LLTS +N ++ E +S Q+ P SP G LISP S SGT S
Sbjct: 178 FAQLLTSSLELTRRDSTSGMNQKFSSSHYEFRSNQVCPGSPGGGNLISPGSVISNSGTSS 237
Query: 230 PFPDPEVQTSSRSTFPSFPVREPPKILD-----------------------GEGIATQKL 266
P+P +S F + EPPK L G G+A+ L
Sbjct: 238 PYP-------GKSPMVEFRIGEPPKFLGFEHFTARKWGSRFGSGSITPVGHGSGLASGAL 290
Query: 267 IPRHMRNGGSLLDGHIS---AAVPV---VDFSARLQNNDHA-----MDHRVSFELTVEDV 315
P NG ++ G+++ P+ + A L N+DH DHRVSFELT EDV
Sbjct: 291 TP----NGPEIVSGNLTPNNTTWPLQNQISEVASLANSDHGSEVMVADHRVSFELTGEDV 346
Query: 316 ARCLEKKTNINGESAAASFRLVPTGNGDHIHPRESNDTRAGLCVDETYHDLPEKARRSLS 375
ARCL K N + + R+ N D I ES+ T +++ D + R
Sbjct: 347 ARCLASKLNRSHD------RM---NNNDRIETEESSSTDIRRNIEKRSGDRENEQHRIQK 397
Query: 376 L-----RKAKEFKFNNVDAPSVEPSVGSDWWANEKVAGITSEPRKSWSFFPVAQPGVS 428
L +KEFKF+N ++ EKVAG SWSFFP + GVS
Sbjct: 398 LSSSSIGSSKEFKFDNTKDENI-----------EKVAG------NSWSFFPGLRSGVS 438
>AT4G25620.1 | chr4:13067447-13069296 REVERSE LENGTH=450
Length = 449
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 171/487 (35%), Positives = 218/487 (44%), Gaps = 107/487 (21%)
Query: 7 MRPVHNSXXXXXXXXXXX-XXXESRTQPQAEPRRKWADWLSVYFCFGSQKNGRRISHAVL 65
MR V+NS ESRTQP + +++ W S+Y+CFGS+KN +RI HAVL
Sbjct: 1 MRSVNNSSVDTVNAAASAIVSAESRTQPSSVQKKR-GSWWSLYWCFGSKKNNKRIGHAVL 59
Query: 66 VPEPLPPRTD-APMPEIPIHXXXXXXXXXXXXXXXXXXLQSGGASIVQSPVGAXXXXXXX 124
VPEP AP+ + L SG S +P
Sbjct: 60 VPEPAASGAAVAPVQNSSSNSTSIFMPFIAPPSSPASFLPSGPPSASHTP------DPGL 113
Query: 125 XXXXXXXXXXXIFAIGPYAHETQLVSPPVFSAFTTEPSTAPFTPPPESVHLTTPSSPEVP 184
F IGPYAHETQ V+PPVFSAFTTEPSTAPFT +PSSPEVP
Sbjct: 114 LCSLTVNEPPSAFTIGPYAHETQPVTPPVFSAFTTEPSTAPFT-----PPPESPSSPEVP 168
Query: 185 YAKLLTS------------INNSKNAETGELQSYQIYPESPIGRLISPSSACSGTCSPFP 232
+A+LLTS +N +A E +S Q+YP SP G LISP SGT SP+P
Sbjct: 169 FAQLLTSSLERARRNSGGGMNQKFSAAHYEFKSCQVYPGSPGGNLISPG---SGTSSPYP 225
Query: 233 DPEVQTSSRSTFPSFPVREPPKIL-----------------------------------D 257
+ + F + EPPK L D
Sbjct: 226 G-------KCSIIEFRIGEPPKFLGFEHFTARKWGSRFGSGSITPAGQGSRLGSGALTPD 278
Query: 258 GEGIATQKLIPR------HMRNG------GSLLDGHISAAVPVVDFS-ARLQNNDHAM-- 302
G + + + P M G GSLLD IS + + ++ND A+
Sbjct: 279 GSKLTSGVVTPNGAETVIRMSYGNLTPLEGSLLDSQISEVASLANSDHGSSRHNDEALVV 338
Query: 303 DHRVSFELTVEDVARCLEKKTNINGESAAASFRLVPTGNGDHIHPRESNDTRAGLCVDET 362
HRVSFELT EDVARCL K N +G AS G+H+ P C +
Sbjct: 339 PHRVSFELTGEDVARCLASKLNRSGSHEKAS--------GEHLRPN---------CCKTS 381
Query: 363 YHDLPEKAR--RSLSLRKAKEFKFNNVDAPSVEPSVGSDWWANEKVAGITSE-PRKSWSF 419
E+++ RS S KEFKF++ + +E + S+WWANEKVAG PR SW+F
Sbjct: 382 GETESEQSQKLRSFSTGSNKEFKFDSTNEEMIE-KIRSEWWANEKVAGKGDHSPRNSWTF 440
Query: 420 FPVAQPG 426
FPV + G
Sbjct: 441 FPVLRSG 447
>AT1G63720.1 | chr1:23636122-23637348 REVERSE LENGTH=359
Length = 358
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 147/303 (48%), Gaps = 62/303 (20%)
Query: 38 RRKWADWLSVYFCFGSQKNGRRISHAVLVPEPLPPRTDAPMPEIPIHXXXXXXXXXXXXX 97
+RKW + S+ CFGS + +RI ++VLVPEP+ + +
Sbjct: 37 KRKWWNRWSLLKCFGSSRQRKRIGNSVLVPEPVSMSSSNSTTSNSGYRSVITTLPFIAPP 96
Query: 98 XX-XXXLQSGGASIVQSPVGAXXXXXXXXXXXXXXXXXXIFAIGPYAHETQLVSPPVFSA 156
QS S QSPVG IFAIGPYAHETQLVSPPVFS
Sbjct: 97 SSPASFFQSEPPSATQSPVGILSFSPLPCNNRPS-----IFAIGPYAHETQLVSPPVFST 151
Query: 157 FTTEPSTAPFTPPPE--SVHL--TTPSSPEVPYAKLLTSINNSKN-------AETGELQS 205
+TTEPS+AP TPP + S++L TTPSSPEVP+A+L S + + + + + E Q
Sbjct: 152 YTTEPSSAPITPPLDDSSIYLTTTTPSSPEVPFAQLFNSNHQTGSYGYKFPMSSSYEFQF 211
Query: 206 YQIYPESPIGRLISPSSACSGTCSPFPDPEVQTSSRSTFPSFPVREPPKILDGE--GIAT 263
YQ+ P SP+G+LISPS SG SPFPD E S FP F V +PPK+L + G+ T
Sbjct: 212 YQLPPGSPLGQLISPSPG-SGPTSPFPDGET-----SLFPHFQVSDPPKLLSPKTAGVTT 265
Query: 264 ----QKLIPRHMRNGGSLLDGHISAAVPVVDFSARLQNNDHAMDHRVSFELTVEDVARCL 319
QK++ H VSF+L + V RC+
Sbjct: 266 PCKEQKIVRPH---------------------------------KPVSFDLDADHVIRCV 292
Query: 320 EKK 322
++K
Sbjct: 293 DQK 295
>AT1G76660.1 | chr1:28769157-28771036 REVERSE LENGTH=432
Length = 431
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 34 QAEPRRKWADWLSVYFCFGSQKNGRRISHAVLVPEPLPPRTDAPMPEIPIHXXXXXXXXX 93
+ + R++W L V+ CF SQK G+RI A +PE A P
Sbjct: 4 EQDQRKRWGGCLGVFSCFKSQKGGKRIVPASRIPEG--GNVSASQPNGAHQAGVLNNQAA 61
Query: 94 XXXXXXXXXLQSGGASIVQSPVGAXXXXXXXXXXXXXXX----XXXIFAIGPYAHETQLV 149
S AS S + + ++A GPYAHETQLV
Sbjct: 62 GGINLSLLAPPSSPASFTNSALPSTTQSPNCYLSLAANSPGGPSSSMYATGPYAHETQLV 121
Query: 150 SPPVFSAFTTEPSTAPFTPPPESVHLTTPSSPEVPYAKLLTSINNSKNAETG---ELQ-S 205
SPPVFS FTTEPSTAPFTPPPE LT PSSP+VPYA+ LTS + KN+ G +LQ +
Sbjct: 122 SPPVFSTFTTEPSTAPFTPPPELARLTAPSSPDVPYARFLTSSMDLKNSGKGHYNDLQAT 181
Query: 206 YQIYPESPIGRLISPSSACSG 226
Y +YP SP L SP S SG
Sbjct: 182 YSLYPGSPASALRSPISRASG 202
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,530,185
Number of extensions: 421840
Number of successful extensions: 1505
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1490
Number of HSP's successfully gapped: 6
Length of query: 428
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 327
Effective length of database: 8,337,553
Effective search space: 2726379831
Effective search space used: 2726379831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)