BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0819400 Os02g0819400|AK100921
(522 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G45090.1 | chr3:16490752-16494452 REVERSE LENGTH=718 588 e-168
AT5G60760.1 | chr5:24438465-24442004 FORWARD LENGTH=739 568 e-162
>AT3G45090.1 | chr3:16490752-16494452 REVERSE LENGTH=718
Length = 717
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/510 (61%), Positives = 367/510 (71%), Gaps = 34/510 (6%)
Query: 11 GSRLGITTVVSTDSIRHMMRGFTDEKQNPLLYASTYHAGECLDPXXXXXXXXXXXXXXLD 70
GSRLGITTVVSTDSIRHMMR F DEKQNPLL+ASTYHAGE LDP L
Sbjct: 179 GSRLGITTVVSTDSIRHMMRSFADEKQNPLLWASTYHAGEYLDPVAVAESKAKRKAKKLK 238
Query: 71 IVSHPNTNEGRDDTSDDKAHHGSSELPPRTELIGSKQMAIEGFKAQSEMVIDSLDRLITS 130
N+N + D + + TEL+ KQMAIEG+KAQSEMVIDSLDRLIT+
Sbjct: 239 GSRGVNSNAQKTDAGSNSS---------TTELLSHKQMAIEGYKAQSEMVIDSLDRLITT 289
Query: 131 WEEQKQSVIVEGVHLSLNFVMGLMKKHPSIIPFMVYIANEEKHMERFAVRAKYMTLDPAK 190
WEE+ +SV+VEGVHLSLNFVMGLMKKHPSI+PFMVYIANEEKH+ERFAVRAKYMTLDPAK
Sbjct: 290 WEERNESVVVEGVHLSLNFVMGLMKKHPSIVPFMVYIANEEKHLERFAVRAKYMTLDPAK 349
Query: 191 NRYIKYIRNIRAIQDYLCNRADKHLVPKINNTNVDQSVAAIHATVFSCLRRREAGEQLYD 250
N+Y+KYIRNIR IQDYLC RADKHLVPKINNTNVD+SVA IHATVF CLRRRE GE+LYD
Sbjct: 350 NKYVKYIRNIRTIQDYLCKRADKHLVPKINNTNVDKSVATIHATVFGCLRRRETGEKLYD 409
Query: 251 LNTNTVAVVNEEYRNQRAANSLGSKGMFQLIQRQGSSRNLMAILNTDGSVTKAWHVDK-N 309
TNTV+V+++E+RNQ AANSL SKGMFQ+IQRQGSSR MA+ NTDG+V K W V
Sbjct: 410 TTTNTVSVIDDEHRNQCAANSLTSKGMFQVIQRQGSSRRFMALCNTDGTVAKTWPVASVG 469
Query: 310 NGNGSLDGTSSDKSTKNPMYDTFGKAEPVNLQFGSFGISAWMSDTGGTSHTGSVDDLRAD 369
+ T D T++ ++ KAEPVNLQFG FGISAW SD G TSH GSVDDLRAD
Sbjct: 470 KIRKPVVNTEMDDGTEHQLH----KAEPVNLQFGHFGISAWPSD-GATSHAGSVDDLRAD 524
Query: 370 GIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADD------PPDAGTDEDLTD 423
IETG R+YSSCCSSP+ SD PSKELME+ SV GS+ED ++ PD+ DEDL+D
Sbjct: 525 IIETGSRHYSSCCSSPRTSDGPSKELMEEQ-SVNGSDEDDEEGDDDFHEPDS--DEDLSD 581
Query: 424 EERDMHEIEAGSVDEHSTKSDEEYDDLAMQDVMENGYWSDDEQAASSTKNSSNQEKNIHX 483
+ + E GSVDE STKSDEEYDDLAM+D YW+D+E+ S S + N
Sbjct: 582 NNDERNRDEIGSVDEESTKSDEEYDDLAMED---KSYWTDNEEEESRDTISMVSQNN--- 635
Query: 484 XXXXXXXXXEGSGNDRFHHNLAFFLKMSKK 513
+ + +D++ NL FLK + +
Sbjct: 636 ----HNEASKTNKDDKYSQNLDLFLKTTNQ 661
>AT5G60760.1 | chr5:24438465-24442004 FORWARD LENGTH=739
Length = 738
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 311/509 (61%), Positives = 369/509 (72%), Gaps = 28/509 (5%)
Query: 11 GSRLGITTVVSTDSIRHMMRGFTDEKQNPLLYASTYHAGECLDPXX-XXXXXXXXXXXXL 69
GSRLGITTVVSTDSIRHMMR F DEKQNPLL+ASTYHAGE LDP +
Sbjct: 193 GSRLGITTVVSTDSIRHMMRSFVDEKQNPLLWASTYHAGEYLDPVAVAESKARRRRAKKM 252
Query: 70 DIVS--HPNTNEGRDDTSDDKAHHGSSELPPRTELIGSKQMAIEGFKAQSEMVIDSLDRL 127
D + +EG + + GS++ P L+ KQMA+EGFKAQSEMVID+LDRL
Sbjct: 253 DSIEDEKAKASEGGKAKNTQQTDVGSTKNTPV--LLSPKQMAVEGFKAQSEMVIDNLDRL 310
Query: 128 ITSWEEQKQSVIVEGVHLSLNFVMGLMKKHPSIIPFMVYIANEEKHMERFAVRAKYMTLD 187
IT+WEE+K+SVIVEGVHLSLNFVMGLMKKHPSI+PFMVYIANEEKH+ERFAVRAKYMTLD
Sbjct: 311 ITAWEERKESVIVEGVHLSLNFVMGLMKKHPSIVPFMVYIANEEKHLERFAVRAKYMTLD 370
Query: 188 PAKNRYIKYIRNIRAIQDYLCNRADKHLVPKINNTNVDQSVAAIHATVFSCLRRREAGEQ 247
P KN+Y+KYIRNIR IQDYLC RADKHLVPKINNTNVD+SVAAIHATVFSCLRRREAGE
Sbjct: 371 PEKNKYVKYIRNIRTIQDYLCKRADKHLVPKINNTNVDKSVAAIHATVFSCLRRREAGEH 430
Query: 248 LYDLNTNTVAVVNEEYRNQRAANSLGSKGMFQLIQRQGSSRNLMAILNTDGSVTKAW--- 304
LYD TNTV+V+++EYRNQ ANSL SKGMFQLIQR+GSSR+LMA+LNTDG+ + W
Sbjct: 431 LYDATTNTVSVIDDEYRNQCTANSLSSKGMFQLIQRKGSSRHLMALLNTDGTFARTWPVT 490
Query: 305 -HVDKNNGNGSLDGTSSDKSTKNPMYDTFGKAEPVNLQFGSFGISAWMSDTGGTSHTGSV 363
VD++ + + ++P+Y KAEPVNLQFG FGISAW SD G TS GSV
Sbjct: 491 GKVDESGKPVFCNEMIEENGMEHPVYGYLQKAEPVNLQFGLFGISAWPSD-GATSRAGSV 549
Query: 364 DDLRADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDA-DDPPDAGTDEDLT 422
DD +AD ET RYYSSCCSSP++S+ SKEL ED SV GS+E+ DDPP+ TD
Sbjct: 550 DDCKADMAETSSRYYSSCCSSPRMSEGTSKELKEDQ-SVHGSDEEVEDDPPEPDTDFSDD 608
Query: 423 DEERDMHEIEAGSVDEHSTKSDEEYDDLAMQDVMENGYWSDDEQAASSTKNSSNQEKNIH 482
D +RD E+ GSVDE STKSDEEYDDLAM+D YW+D+E+ + T +++ N
Sbjct: 609 DNKRDHDEV--GSVDEQSTKSDEEYDDLAMED---KSYWTDEEEESRDTIAIMSEKNN-- 661
Query: 483 XXXXXXXXXXEGSGNDRFHHNLAFFLKMS 511
+ + D++ NL FL+ +
Sbjct: 662 ---------KQATKEDKYIQNLDLFLRTA 681
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,759,173
Number of extensions: 529126
Number of successful extensions: 2067
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2058
Number of HSP's successfully gapped: 2
Length of query: 522
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 419
Effective length of database: 8,282,721
Effective search space: 3470460099
Effective search space used: 3470460099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)