BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0819300 Os02g0819300|J023039H08
(68 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10360.1 | chr3:3211276-3215144 REVERSE LENGTH=1004 87 2e-18
AT2G29200.1 | chr2:12549483-12553185 REVERSE LENGTH=969 82 4e-17
AT2G29140.1 | chr2:12531392-12535060 FORWARD LENGTH=965 80 2e-16
AT2G29190.1 | chr2:12544260-12548071 REVERSE LENGTH=973 80 2e-16
AT3G20250.1 | chr3:7059098-7062660 REVERSE LENGTH=962 77 2e-15
AT4G25880.1 | chr4:13155518-13159078 FORWARD LENGTH=862 74 1e-14
AT1G22240.1 | chr1:7853084-7854963 FORWARD LENGTH=516 49 5e-07
>AT3G10360.1 | chr3:3211276-3215144 REVERSE LENGTH=1004
Length = 1003
Score = 87.0 bits (214), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/48 (85%), Positives = 43/48 (89%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
S DQYGSRFIQQKLETA+ EEK+ IFPEILP RTLMTDVFGNYVIQK
Sbjct: 673 SMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQK 720
>AT2G29200.1 | chr2:12549483-12553185 REVERSE LENGTH=969
Length = 968
Score = 82.4 bits (202), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKVSSPTIP 62
SSDQYGSRFIQQKLETA+ +EK+ ++ EI+PQA LMTDVFGNYVIQK +P
Sbjct: 639 SSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLP 693
>AT2G29140.1 | chr2:12531392-12535060 FORWARD LENGTH=965
Length = 964
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/55 (67%), Positives = 45/55 (81%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKVSSPTIP 62
SSDQYGSRFIQQKLETA+ +EK+ ++ EI+P+A LMTDVFGNYVIQK +P
Sbjct: 635 SSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLP 689
>AT2G29190.1 | chr2:12544260-12548071 REVERSE LENGTH=973
Length = 972
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/55 (67%), Positives = 45/55 (81%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKVSSPTIP 62
SSDQYGSRFIQQKLETA+++EK+ ++ EI+P A LMTDVFGNYVIQK +P
Sbjct: 643 SSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLP 697
>AT3G20250.1 | chr3:7059098-7062660 REVERSE LENGTH=962
Length = 961
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 40/48 (83%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
S DQ+GSRFIQQKLE S EEK ++F E+LPQA LMTDVFGNYVIQK
Sbjct: 637 SVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQK 684
>AT4G25880.1 | chr4:13155518-13159078 FORWARD LENGTH=862
Length = 861
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 38/48 (79%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
S+DQ+GSRFIQQKLE EEK +F EILP A LMTDVFGNYVIQK
Sbjct: 541 SADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQK 588
>AT1G22240.1 | chr1:7853084-7854963 FORWARD LENGTH=516
Length = 515
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKV 56
+ DQ+G RF+Q E SA + IF E++P LM D FGNY++QK+
Sbjct: 207 AKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKL 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,376,257
Number of extensions: 40259
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 7
Length of query: 68
Length of database: 11,106,569
Length adjustment: 40
Effective length of query: 28
Effective length of database: 10,009,929
Effective search space: 280278012
Effective search space used: 280278012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)