BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0818700 Os02g0818700|J100071I11
         (276 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08125.2  | chr1:2539748-2542132 REVERSE LENGTH=323            254   3e-68
AT5G44170.1  | chr5:17780394-17781098 FORWARD LENGTH=235           64   9e-11
AT1G73320.1  | chr1:27565728-27567206 REVERSE LENGTH=317           59   3e-09

>AT1G08125.2 | chr1:2539748-2542132 REVERSE LENGTH=323
          Length = 322

 Score =  254 bits (650), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/310 (47%), Positives = 174/310 (56%), Gaps = 44/310 (14%)

Query: 5   RLNSPSTSAISLELLGHRLHISQDPNSKHLGTTVWDASMVFVKFLEKNSRKGRFSPSKLK 64
           RLNSPST  +++E+LGH L  +QDPNSKHLGTTVWDASMVF K+L KNSRKGRFS SKLK
Sbjct: 12  RLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSSSKLK 71

Query: 65  GKRVIEXXXXXXXXXXXXXXXXXDVVTTDQVEVLPLLLRNVERNKXXXXXXXXXXXXXXX 124
           GKR IE                 DVVTTDQ EVLPLL RNVE N                
Sbjct: 72  GKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWN-TSRIVQMNPGSAFGS 130

Query: 125 VTVAELDWGNKDHIRAVDPPFDYIIGTDV-------------------------LGYEIR 159
           + VAELDWGN+DHI AV+PPFDY+IGTDV                         LGYEIR
Sbjct: 131 LRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIR 190

Query: 160 STTVHEQMMQMWKSNFNVKTVSKSKMDVKYQHPSIHLYIMDPKATLIPXXXXXXXXXXXX 219
           ST VHE+M+QMWK NF VKT+ +SKMD +YQ PSIHLYIM  K+                
Sbjct: 191 STVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDPSIHLYIMAQKSAAESSGNVSRDEVVID 250

Query: 220 XXXXPGDDEDPGAESGGPCTGSVDSAEAKTAG-YLDDD-------------WEIRRCGAM 265
                 + + P  E    C   V+     T G  L++D             WE+RR G +
Sbjct: 251 TDETKCETKVPTGE----CHKRVEEEAVVTHGPRLNEDSLLMRLRDGKLSEWEMRRYGTV 306

Query: 266 AARLLKDVKL 275
           AA+LL+DVK+
Sbjct: 307 AAQLLRDVKI 316



>AT5G44170.1 | chr5:17780394-17781098 FORWARD LENGTH=235
          Length = 234

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 84/229 (36%), Gaps = 49/229 (21%)

Query: 13  AISLELLGHRLHISQDPNSKHLGTTVWDASMVFVKFLEK-------------NSRKGRFS 59
            I L + G +L I QD  S H+GT+VW  S++  KF E+             N     F 
Sbjct: 8   VIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPNPYAELFD 67

Query: 60  PSKLKGKRVIEXXXXXXXXXXXXXXXXXDVVTTDQVEVLPLLLRNVERNKXXXXXXXXXX 119
             + +G  +                   ++V TD   V+P L  N++RNK          
Sbjct: 68  FRRRRGIEL--GTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNK---------T 116

Query: 120 XXXXXVTVAELDWGNKDHIRAVDPPFDYIIGTDV-------------------------L 154
                +  + + W N+D I A+ PPFD +I  DV                         L
Sbjct: 117 ALGKSLKTSIVYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLL 176

Query: 155 GYEIRSTTVHEQMMQMWKSNFNVKTVSKSKMDVKYQHPSIHLYIMDPKA 203
           GY+IRS    +   ++    F ++ V    +   Y +    +YI   K 
Sbjct: 177 GYQIRSPEADKLFWELCDIVFKIEKVPHEHLHSDYAYEETDVYIFRKKV 225



>AT1G73320.1 | chr1:27565728-27567206 REVERSE LENGTH=317
          Length = 316

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 39/227 (17%)

Query: 6   LNSPSTSAISLELLGHRLHISQDPNSKHL----GTTVWDASMVFVKFLEKNSRKGRFSPS 61
           L + S+  + L+  GH L I Q P S +     G+ +WD+ +V  KFLE +      S  
Sbjct: 86  LVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVDSKVLS-- 143

Query: 62  KLKGKRVIEXXXXXXXXXXXXXXXXXDVVTTDQVEVLPLLLRNVERNKXXXXXXXXXXXX 121
            L+GK+++E                 + V TD  + L LL +N++ N             
Sbjct: 144 -LEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTN-------LHRGNT 195

Query: 122 XXXVTVAELDWGNKDHIRAVDPPFDYIIGTDV-------------------------LGY 156
                V EL WG+      ++P  DY++G+DV                         L  
Sbjct: 196 RGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFLSG 255

Query: 157 EIRSTTVHEQMMQMWKSNFNVKTVSKSKMDVKYQHPSIHLYIMDPKA 203
           E+R+  V E  ++    +F +  V +++    Y+   + LY+++ K+
Sbjct: 256 ELRNDAVLEYFLETALKDFAIGRVEQTQWHPDYRSHRVVLYVLEKKS 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,088,429
Number of extensions: 172420
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 3
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)