BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0816800 Os02g0816800|AK102271
         (408 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20360.1  | chr2:8786070-8789098 FORWARD LENGTH=403            555   e-158

>AT2G20360.1 | chr2:8786070-8789098 FORWARD LENGTH=403
          Length = 402

 Score =  555 bits (1431), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/364 (74%), Positives = 311/364 (85%), Gaps = 2/364 (0%)

Query: 40  LGGADGARYMSARAPAVKGTGHLVRKGTGGRSSVSGIIATVFGATGFLGRYLVQQLAKMG 99
           L G D  RY S+ A   KG GHL RKGTGGRSSVSGI+ATVFGATGFLGRYLVQQLAKMG
Sbjct: 35  LNGTDNCRYSSSLA--TKGVGHLARKGTGGRSSVSGIVATVFGATGFLGRYLVQQLAKMG 92

Query: 100 SQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYETR 159
           SQVLVPFRGSED  RHLKLMGDLGQ+VPMK++PRD DSIKAVMAK+NVVINLIGREYETR
Sbjct: 93  SQVLVPFRGSEDSPRHLKLMGDLGQVVPMKFDPRDEDSIKAVMAKANVVINLIGREYETR 152

Query: 160 NYGFDEVNHHMAEQLAMISKEHGGIMRFIQVXXXXXXXXXXXRMLRAKAAGEESVLKEFP 219
           N+ F++ NHH+AE+LA+++KEHGGIMR+IQV           RMLRAKAA EE+VL   P
Sbjct: 153 NFSFEDANHHIAEKLALVAKEHGGIMRYIQVSCLGASVSSPSRMLRAKAAAEEAVLNALP 212

Query: 220 EATIMRPATMIGTEDRILNRWAQFAKNWGFLPLVDSGSTKIQPVYVVDVAAAIVNSLKDD 279
           EATIMRPATMIGTEDRILN W+ F K +GFLPL+  G+TK QPVYVVDVAAAIV +LKDD
Sbjct: 213 EATIMRPATMIGTEDRILNPWSMFVKKYGFLPLIGGGTTKFQPVYVVDVAAAIVAALKDD 272

Query: 280 GTSMGKTYELGGPEIYTVHELAELMYETIREWPRYIDVPLPIARAIASPREMLLNKVPFP 339
           G+SMGKTYELGGP+++T HELAE+MY+ IREWPRY+ +P PIA+A+A+PR+ ++NKVPFP
Sbjct: 273 GSSMGKTYELGGPDVFTTHELAEIMYDMIREWPRYVKLPFPIAKAMAAPRDFMVNKVPFP 332

Query: 340 LPTPSIFNKDQINAFSVDTLVSDNALTFSDLGIVPHKLKGYPVEFLVCYRKGGPAFGSTV 399
           LP+P IFN DQINA + DTLVSDNAL F DL +VPHKLKGYPVEFL+ YRKGGP FGSTV
Sbjct: 333 LPSPQIFNLDQINALTTDTLVSDNALKFQDLDLVPHKLKGYPVEFLIQYRKGGPNFGSTV 392

Query: 400 SEKI 403
           SEKI
Sbjct: 393 SEKI 396



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,379,384
Number of extensions: 349951
Number of successful extensions: 841
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,337,553
Effective search space: 2559628771
Effective search space used: 2559628771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)