BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0816700 Os02g0816700|AK059572
         (155 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04555.1  | chr1:1242743-1243949 FORWARD LENGTH=153            145   1e-35
AT4G33380.1  | chr4:16072064-16074605 FORWARD LENGTH=329           64   3e-11

>AT1G04555.1 | chr1:1242743-1243949 FORWARD LENGTH=153
          Length = 152

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 104/158 (65%), Gaps = 12/158 (7%)

Query: 1   MDGQGAWRGGASASSRISYKNATVAVCAINLLACALLFRNYYSSWPRIAGD---HQFDSA 57
           MD Q  WR       R S+KNAT+A+  IN+L    L + +++S    +      +  SA
Sbjct: 1   MDHQ--WR------MRFSFKNATIALTVINVLIFLFLLQGFFTSSSSPSSSSSSRRLISA 52

Query: 58  QLRFIWESEELRRAMEPVDLIRRVKEIEQEAYGEHGMMTQEDAKQTAAVDASKRLQDLRA 117
           QLR+I E+EELR  M+P++LIRRV+EIEQEA        Q+D KQT AVD SKRL+D RA
Sbjct: 53  QLRYIKEAEELRLKMQPLELIRRVREIEQEASAGQETEQQKDVKQTTAVDLSKRLKDFRA 112

Query: 118 GNDGSSQKALEEWRKRKMERARQRAIEKN-GTSSAAKT 154
            ND SS KALEEWRKRKMERARQR +EK  G SS+ KT
Sbjct: 113 LNDASSLKALEEWRKRKMERARQRDLEKTGGVSSSTKT 150



>AT4G33380.1 | chr4:16072064-16074605 FORWARD LENGTH=329
          Length = 328

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 3   GQGAWRGGASASSRISYKNATVAVCAINLLACALLFRNYYSSWPRIAGDH----QFDSAQ 58
           G G W GG + +  +S+K  T+ VC  N+L    + R  Y+S   I  ++    ++ + +
Sbjct: 4   GGGEWTGGIAGTGVLSFKRITLLVCFFNILIALFVLRFLYASSLHIYSNNDNVVKYTADE 63

Query: 59  LRFIWESEELRRAMEPVDLIRRVKEIEQE-AYGEHGMMTQEDAKQTAAVDASKRLQDLR- 116
           +R + ES  +RR+ EP  +++ VK+++ E +  E       + K     +  +RL+    
Sbjct: 64  IRKMEESIRIRRSKEPTLILQLVKKLKHEVSTAESSTELSPNVKHKLVDEILQRLKSFED 123

Query: 117 AGNDGSSQKALEEWRKRKMERARQRAIEKNGTSSA 151
             N    ++ +E WR  K+E A++    +NG +S 
Sbjct: 124 KSNVTQLREVVETWRNEKLEEAKELIQGQNGVNST 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.126    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,216,440
Number of extensions: 116678
Number of successful extensions: 508
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)