BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0816300 Os02g0816300|AK071879
(1172 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20190.1 | chr2:8711862-8718813 REVERSE LENGTH=1440 482 e-136
>AT2G20190.1 | chr2:8711862-8718813 REVERSE LENGTH=1440
Length = 1439
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/690 (40%), Positives = 405/690 (58%), Gaps = 37/690 (5%)
Query: 512 KEPRNNYIPNFRRPLLSKQMTNWFYASNRSDLDDKQLILGEMVSNMDVPSSLTEALSLGL 571
+E +++PNF+RPLL K + A R DD QL +G++ + +D P+SL EAL+ GL
Sbjct: 741 RESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDSQLQIGDISNFVDGPASLNEALNDGL 800
Query: 572 KPKSDWMMRVYAFNFLRQSLLEQGPRGIQEVAQNFDKVMRFVSRYLADPHHKIAQAALSS 631
SDW RV AFNFL Q+LL+QGP+G QEV Q+F+KVM+ R+L DPHHK+AQAALS+
Sbjct: 801 NSSSDWCARVAAFNFL-QTLLQQGPKGAQEVIQSFEKVMKLFLRHLDDPHHKVAQAALST 859
Query: 632 LSEIMPVFKKPFEHYLDKTLPHVFSQLNDPKESIKQQCSAILKLAGEIYSIDSLLPALLR 691
L++++P +KPFE Y+++ LPHVFS+L DPKE ++Q CS+ L++ + YS+DSLLPALLR
Sbjct: 860 LADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQPCSSTLEIVSKTYSVDSLLPALLR 919
Query: 692 TLEEQKSPKSKLAIIEFANSSFVKCTVSSDNYSSSSFLKPWLEKLALLFKDKNSKLKEVS 751
+L+EQ+SPK+KLA+IEFA +SF + + + +S LK WL KL L +DKN+KLKE S
Sbjct: 920 SLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSGILKLWLAKLTPLTRDKNTKLKEAS 979
Query: 752 VAGFSSIYSHYDPASLLSFLVSLSMEEQKRLRRAIKQLIPTIESDLEEFLQQRKHKPKVP 811
+ S+Y+HYD A LL++++SLS+EEQ LRRA+KQ P IE DL ++Q +K K ++
Sbjct: 980 ITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALKQYTPRIEVDLLNYMQSKKEKQRIK 1039
Query: 812 LFDSFVGAYQPYAKGLVIKQNKHHLHATYQSDCLQADDVFDSALHCLPR-ISLEVRERRA 870
+D +G K+ Y + +D + P I+ V + +
Sbjct: 1040 SYDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSIDSDSGRKWSSSQEPTMITGGVGQNVS 1099
Query: 871 GKIESESYDESN---GHDAEMMDKKSSD-----------TRSSDPPRTFDYNVISDNTVE 916
+ + Y +++++ K SD +R+S + + ++ D +
Sbjct: 1100 SGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAGQNSISRTSPNGSSENIEILDDLSPP 1159
Query: 917 SPRKEG---TDIKRFEESNESELNITVRNRNVIL-----NSCQDHGPSISRTYHQ----- 963
K G T + E +E+E++ + + +L N+ + GPSI + H
Sbjct: 1160 HLEKNGLNLTSVDSLEGRHENEVSRELDLGHYMLTSIKVNTTPESGPSIPQILHMINGSD 1219
Query: 964 --------DEMSQMEEVPEINGPSVSIKNXXXXXXXXXXXXXXXXXXTRELALTLLVEIL 1015
+ Q+ E N SV K +ELAL+L+ E+L
Sbjct: 1220 GSPSSSKKSGLQQLIEASVANEESVWTKYFNQILTVVLEVLDDEDFSIKELALSLISEML 1279
Query: 1016 EKQRKAMENCIDTLIVKLLHATKDAALKVVNQAHICLTTVVTQFDPLTCLRAIASQLANQ 1075
+ Q+ AME+ ++ +I KLLH +KD KV +A CLTTV++Q+DP CL I L +
Sbjct: 1280 KSQKDAMEDSVEIVIEKLLHVSKDTVPKVSTEAEQCLTTVLSQYDPFRCLSVIVPLLVTE 1339
Query: 1076 DEKVLIVSINSLSKLVIRLSQDNLMAHLSIFLPALLDAFENHSPYVRKAVVLCLVDTYLK 1135
DEK L+ IN L+KLV RLSQ+ LM LS FLPA+ +AF + S VRK VV CLVD Y+
Sbjct: 1340 DEKTLVACINCLTKLVGRLSQEELMDQLSSFLPAVFEAFGSQSADVRKTVVFCLVDIYIM 1399
Query: 1136 LGPAFLPYLERLDSAQLQLVTTYASRLSQT 1165
LG AFLPYLE L+S Q++LVT YA+R+SQ
Sbjct: 1400 LGKAFLPYLEGLNSTQVRLVTIYANRISQA 1429
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/323 (57%), Positives = 240/323 (74%)
Query: 1 MKEMNARMGNGEKTPCISDVQDNRCMTIQIEPTDTNQAKKSPKVKIVTRDASLLAGDGDI 60
+K++NAR+ E +D + + +++ + N K SP+ K TR+ SL GD DI
Sbjct: 208 VKDINARLERIEPQLRSTDGRSAHHVVNEVKASSVNPKKSSPRAKAPTRENSLFGGDADI 267
Query: 61 TRKSLGPIKVFSEKDLSREIERVASTLHPDNEWAIRITAMQRVEGLVLGGAADYSAFPML 120
T K + PIKV+SEK+L RE E++A+TL P+ +W++RI+AM+RVEGLV GGA DYS F L
Sbjct: 268 TEKPIEPIKVYSEKELIREFEKIAATLVPEKDWSMRISAMRRVEGLVAGGATDYSCFRGL 327
Query: 121 LKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCAELLIPVLLKNVVITIHVI 180
LKQLV PL TQ+ DRRS++VKQACHLL LSKELL DFE CAE IPVL K VVIT+ VI
Sbjct: 328 LKQLVGPLSTQLADRRSTIVKQACHLLCLLSKELLGDFEACAETFIPVLFKLVVITVLVI 387
Query: 181 AESSDNCIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCCEYAILMLELWVDTPEIQRS 240
AES+DNCIK MLRNCK AR+LP+I E AK+D++A+LRARCCEYA+L LE W D PEIQRS
Sbjct: 388 AESADNCIKTMLRNCKAARVLPRIAESAKHDRNAILRARCCEYALLTLEHWPDAPEIQRS 447
Query: 241 VDLYEEFIKCCIEDATSEVRSSARACYRMFSRIWPERSHQLFSSFESSRQKMINDEDAET 300
VDLYE+ I+CC+ DA SEVR++AR CYRMF++ WP+RS +LFSSF+ Q++IN+ED
Sbjct: 448 VDLYEDLIRCCVADAMSEVRATARMCYRMFAKTWPDRSRRLFSSFDPVIQRLINEEDGGI 507
Query: 301 QQRHLSPVERVKLMQPQSSSCNS 323
+RH SP R + QP S ++
Sbjct: 508 HRRHASPSVRERHSQPSFSQTSA 530
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,621,441
Number of extensions: 972691
Number of successful extensions: 3099
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3093
Number of HSP's successfully gapped: 2
Length of query: 1172
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1062
Effective length of database: 8,090,809
Effective search space: 8592439158
Effective search space used: 8592439158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)