BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0806000 Os02g0806000|AK072745
         (271 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39000.1  | chr2:16286454-16287941 REVERSE LENGTH=292          303   9e-83

>AT2G39000.1 | chr2:16286454-16287941 REVERSE LENGTH=292
          Length = 291

 Score =  303 bits (775), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 181/237 (76%), Gaps = 3/237 (1%)

Query: 35  HRCPSFATKPA---AGVCCASPAVELLPSLSPDILVRDARLEDCWEVADTHCSSFFPDYT 91
           H   S +  P+   +G C AS  V+L P++SP+I+VR+ARLEDCWEVA+THCSSFFP Y+
Sbjct: 43  HSSFSISQAPSQINSGACNASQIVDLFPAVSPEIVVREARLEDCWEVAETHCSSFFPGYS 102

Query: 92  FPLDLVLRIDRYIALLSGFSVPPGCMRTCLVAVNSNSLSRSISIECGDLRDADFQEKHGL 151
           FPLD+VLR+DR +A++ GFS+PPGC RTCLVAV  +S+  +I     D +   F  K  L
Sbjct: 103 FPLDVVLRVDRLMAMVMGFSIPPGCQRTCLVAVIGSSVDETICFGSDDFKIGAFDAKISL 162

Query: 152 SKASIAGILTVDTVADYLPRRGPLKQRRTGIAYIANVAVRKEERRKGIAKMLVAEAEERA 211
           +K  +AGILTVDTVADYLPR+GPL+QRRTGIAY++NVAVR+  RRKGIAK L+ +AE  A
Sbjct: 163 NKGYVAGILTVDTVADYLPRKGPLRQRRTGIAYVSNVAVRENFRRKGIAKRLIWKAEALA 222

Query: 212 KSWGCRSMALHCDVNNIAALRLYKNLGYKCIHVPEDAKWPEPKIAKGVRYNFMMKLV 268
           K+WGCR++ LHCD+NN+ A +LYK+ G++ I +PE A WP+PK +   R+ FMMKLV
Sbjct: 223 KNWGCRAIGLHCDLNNLGATKLYKDQGFRSIKIPEGATWPQPKTSPDTRFTFMMKLV 279



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,268,856
Number of extensions: 203884
Number of successful extensions: 451
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)