BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0799700 Os02g0799700|AK065260
         (173 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11090.1  | chr5:3524796-3525449 FORWARD LENGTH=218             67   4e-12
AT5G25280.1  | chr5:8773882-8774544 FORWARD LENGTH=221             64   3e-11

>AT5G11090.1 | chr5:3524796-3525449 FORWARD LENGTH=218
          Length = 217

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 53/114 (46%), Gaps = 20/114 (17%)

Query: 50  CMCSPTNHPGSFRCSLHKEQKRSVHHKXXXXXXXXXXXXXXXXXGGAVRLGGARRMGGSA 109
           CMCSPT HPGSFRCSLHK                           G   L   R    ++
Sbjct: 123 CMCSPTTHPGSFRCSLHKN-----------VANPHGQGTASYTTNG---LNMRRSAMTNS 168

Query: 110 LVRIGAVESGQWARRALAATIRPSPXXXXXXXXXXVAGLRPRPSRLSAVSMAGD 163
           LVRIG VE G+W RRAL   IRPS            A  +PRPSRLS ++ A +
Sbjct: 169 LVRIGGVE-GEWVRRALTTLIRPSSHHLKRR-----AAYQPRPSRLSIMAKADE 216



>AT5G25280.1 | chr5:8773882-8774544 FORWARD LENGTH=221
          Length = 220

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 52/114 (45%), Gaps = 20/114 (17%)

Query: 50  CMCSPTNHPGSFRCSLHKEQKRSVHHKXXXXXXXXXXXXXXXXXGGAVRLGGARRMGGSA 109
           CMCSPT HPGSFRCSLHK                           G   L   R    ++
Sbjct: 126 CMCSPTTHPGSFRCSLHKN-----------VANPHGQGTASYTTNG---LNMRRSAMTNS 171

Query: 110 LVRIGAVESGQWARRALAATIRPSPXXXXXXXXXXVAGLRPRPSRLSAVSMAGD 163
           LVRIG VE G+W RRAL   IRPS            +   PR SRL+++S A D
Sbjct: 172 LVRIGGVE-GEWVRRALTTLIRPSSHQLKRR-----SAYEPRRSRLASMSKAED 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.129    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,559,697
Number of extensions: 65094
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)