BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0798200 Os02g0798200|AK061459
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15580.1  | chr2:6797687-6798815 FORWARD LENGTH=197             75   2e-14
AT1G04790.1  | chr1:1345469-1348143 FORWARD LENGTH=635             50   6e-07
AT5G60820.1  | chr5:24469636-24470895 FORWARD LENGTH=420           47   5e-06

>AT2G15580.1 | chr2:6797687-6798815 FORWARD LENGTH=197
          Length = 196

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 82/214 (38%), Gaps = 39/214 (18%)

Query: 4   MAGMLPGVECARRRRLRQGGGEAPCG---------------TRRPSLCLYAGGHD----H 44
           MAGMLPGVECARRRR    GG  P                 TRRPS  LY   H+    H
Sbjct: 1   MAGMLPGVECARRRRFH--GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAH 58

Query: 45  ALLGSSACKQQRSACEEQQPGWWTLDSNVREAKERLDQKLRSQRESAVVVVKRHNKAQVA 104
                 + + +    +  +     LD   +EAK+RL+++LR      +    R N     
Sbjct: 59  VSFSERSVRNKSYGEDNDE----KLDGAAKEAKQRLNKRLR------IPPRTRQN----- 103

Query: 105 GTSSDGGEQSTATTAAPQWEVYTRKEGXXXXXXXXXXXXPTPXXXXXX-XXXXXXXRAGE 163
               D G +       P  ++ T   G                             + GE
Sbjct: 104 --GKDKGNKLEQGKGKPLGDLPTEVVGLKKSRGRLMEWFKRRVREQQDCAICLDRFKKGE 161

Query: 164 AVAHLPCTHRFHWGCAVPWVQTASRCPVCRAAVY 197
            + HLPC H+FH  C +PW+ T   CP CR  ++
Sbjct: 162 TLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDIW 195



>AT1G04790.1 | chr1:1345469-1348143 FORWARD LENGTH=635
          Length = 634

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 160 RAGEAVAHLPCTHRFHWGCAVPWVQTASRCPVCRAAV 196
           + G+ + HLPC H+FH  C  PW+  +  CPVC+++V
Sbjct: 597 KIGDTIRHLPCLHKFHKDCIDPWLGRSKSCPVCKSSV 633



>AT5G60820.1 | chr5:24469636-24470895 FORWARD LENGTH=420
          Length = 419

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 161 AGEAVAHLPCTHRFHWGCAVPWVQTASRCPVCRAAV 196
            G+ VA LPC H++H  C VPW+   + CPVCR  +
Sbjct: 381 VGKEVAELPCRHKYHSECIVPWLGIRNTCPVCRFEL 416



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.129    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,036,062
Number of extensions: 142592
Number of successful extensions: 641
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 5
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)