BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0798100 Os02g0798100|Os02g0798100
         (464 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05320.1  | chr2:1936016-1937308 FORWARD LENGTH=431            506   e-143

>AT2G05320.1 | chr2:1936016-1937308 FORWARD LENGTH=431
          Length = 430

 Score =  506 bits (1303), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 226/345 (65%), Positives = 272/345 (78%)

Query: 94  PRNADRFPRLPDGHLNIVLYVHNRPRYLRLVVDSLSRAHGIGEALLIVSHDGYFPEMDKI 153
           PRN D FP L    + IVLYVHNR +Y R+ V+SLS+  GI E LLIVSHDGYF EM++I
Sbjct: 85  PRNTDLFPDLAKDRVVIVLYVHNRAQYFRVTVESLSKVKGISETLLIVSHDGYFEEMNRI 144

Query: 154 VQTITFCQVKQIFAPYSPHLFPEAFPGVSSGDCQGKDKAAEKHCQGDPDQYGNHRSPRIV 213
           V++I FCQVKQIF+PYSPH++  +FPGV+  DC+ K   A+ HC+G+PDQYGNHRSP+IV
Sbjct: 145 VESIKFCQVKQIFSPYSPHIYRTSFPGVTLNDCKNKGDEAKGHCEGNPDQYGNHRSPKIV 204

Query: 214 SLKHHWWWMMNTVWDGLDETRDFDGHILFIEEDHYIFPNAYRNAQLLVDLKPSKCPQCYA 273
           SLKHHWWWMMNTVWDGL+ET+  +GHILFIEEDH++FPNAYRN Q L  LKP+KCP C+A
Sbjct: 205 SLKHHWWWMMNTVWDGLEETKGHEGHILFIEEDHFLFPNAYRNIQTLTRLKPAKCPDCFA 264

Query: 274 INLAPSDVKAKGEGWESLVAEKMGNIGYAFNRTVWRKIHAKAKQFCTFDEYNWDITMWAT 333
            NLAPSDVK++GEG ESLVAE+MGN+GY+FNR+VW  IH KA++FC FD+YNWDITMWAT
Sbjct: 265 ANLAPSDVKSRGEGLESLVAERMGNVGYSFNRSVWENIHQKAREFCFFDDYNWDITMWAT 324

Query: 334 VYPSFGSPVYSLRGPRRSAAHFGKCGLHQGQGLSNVCVDNGDATVQLDAIDKVPNIKANW 393
           V+PSFGSPVY+LRGPR SA HFGKCGLHQG+G    C+DNG   +++   DKV NIK  W
Sbjct: 325 VFPSFGSPVYTLRGPRTSAVHFGKCGLHQGRGDEGDCIDNGVVNIEVKETDKVVNIKEGW 384

Query: 394 PVHIIKRQEGYQAGFKGWGGWGDKRYRHTDFGIAAALLYYCSNGS 438
            V + K Q GY+AGF+GWGGWGD R RH     A    Y  S+ S
Sbjct: 385 GVRVYKHQAGYKAGFEGWGGWGDDRDRHLCLDFATMYRYSSSSAS 429



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,638,061
Number of extensions: 418903
Number of successful extensions: 711
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,310,137
Effective search space: 3008269594
Effective search space used: 3008269594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)