BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0795300 Os02g0795300|AK070650
         (365 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54360.1  | chr3:20128570-20131581 REVERSE LENGTH=406          444   e-125

>AT3G54360.1 | chr3:20128570-20131581 REVERSE LENGTH=406
          Length = 405

 Score =  444 bits (1141), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/372 (60%), Positives = 277/372 (74%), Gaps = 11/372 (2%)

Query: 2   SSLCPFAKLASAGATCPVKSDNKTTS-CPVTANNHTDDDDN----EKTGNAN---TDPRV 53
           +S CPF+K A        K    T S CP + +   D++ +    E+ GN N   TD   
Sbjct: 28  ASGCPFSKAARPDDASARKQGETTASGCPFSKSARPDENGSKGCPEQEGNLNKDSTDSAT 87

Query: 54  VPAKCPFGYDSNNTFKLGPLSCVVCHALLHQSSKCTPCSHKFCKACILRFKDCPLCGADI 113
           VPAKCPFGYDS  TFKLGP SC++C ALL++SS+C PC+H FCK C+ RFKDCPLCGADI
Sbjct: 88  VPAKCPFGYDSQ-TFKLGPFSCMLCQALLYESSRCVPCTHVFCKVCLTRFKDCPLCGADI 146

Query: 114 QGIEPDDELQGLVDRFIDGHARIKRSHAAG--DGEAASDKTKVIYEHVSMERGAFLVQQA 171
           + IE D+ LQ +VD+FI+GHARIKRS   G    E  +D  KVIY  VSMERG+FLVQQA
Sbjct: 147 ESIEVDENLQKMVDQFIEGHARIKRSVVNGTEKEEVENDNKKVIYADVSMERGSFLVQQA 206

Query: 172 MRAFRAQNIESAKSRLSMCAEDIREELKSKEDNQELCSQLGAVLGMLGDCCRTLGDAPSA 231
           MRAF AQN ESAKSRL+MC EDIR++L  + +  ELCSQLGAVLGMLGDC R +GD+ SA
Sbjct: 207 MRAFSAQNYESAKSRLAMCTEDIRDQLGREGNTPELCSQLGAVLGMLGDCSRAMGDSSSA 266

Query: 232 ITYYEESAEFLSKLPKKDLELVHTLSVSLNKIGDLCYYDGDLHSARSYYARSLDVRRSAV 291
           + ++EES EFL KLP  DLE+ HTLSVSLNKIGDL YYD DL +ARSYY R+L+VRR A+
Sbjct: 267 VKHFEESVEFLMKLPLNDLEITHTLSVSLNKIGDLKYYDEDLQAARSYYDRALNVRRDAM 326

Query: 292 KEHSAVASQVIDVATSLAKVADVDRNLGNESMAVEGFEEAIKCLENLKLESGEASLEQRR 351
           K H    SQ++DVA SLAKVAD+DR L NE  A +GF+E ++ LE+LKL+S +++LEQRR
Sbjct: 327 KHHPNAPSQILDVAVSLAKVADIDRTLQNEVAATDGFKEGMRLLESLKLDSEDSALEQRR 386

Query: 352 LSVLDFLQKQLD 363
           LSVL+FL+KQ++
Sbjct: 387 LSVLEFLKKQVE 398



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,934,165
Number of extensions: 339232
Number of successful extensions: 1385
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1389
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,364,969
Effective search space: 2216716785
Effective search space used: 2216716785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)