BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0793900 Os02g0793900|AK102581
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80940.1  | chr1:30410959-30411943 FORWARD LENGTH=214          192   1e-49

>AT1G80940.1 | chr1:30410959-30411943 FORWARD LENGTH=214
          Length = 213

 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/139 (76%), Positives = 118/139 (84%), Gaps = 7/139 (5%)

Query: 72  LSEKRKALFEPLEPI---NGKR-SSAEMLLPPPDFEPASYPKGWLVGKKRKLVNVDVVES 127
           LSEKRKALFEPLEPI   NGKR ++A+ LLPPPDFE A+YPKGWL+GKKRKLVNVDVVES
Sbjct: 78  LSEKRKALFEPLEPITNLNGKRPTAADSLLPPPDFETANYPKGWLIGKKRKLVNVDVVES 137

Query: 128 MRRIAIQEMNRKDREINGLNEQLEEDSRVLELLQKQLADERKKRTEIEKENSMLHEQVSM 187
           MRRIA+QEMNRKDREI+GLNEQLEEDSR LE LQ QL  ER KRTEIE+EN+ML EQV M
Sbjct: 138 MRRIAVQEMNRKDREIDGLNEQLEEDSRCLEHLQLQLLQERSKRTEIERENTMLKEQVDM 197

Query: 188 LMNMLDENEAFDEEGEAPP 206
           L+NM+ E+   DEEG   P
Sbjct: 198 LVNMIQED---DEEGAEEP 213



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,716,277
Number of extensions: 194765
Number of successful extensions: 1191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 109 (46.6 bits)