BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0793700 Os02g0793700|AK062552
(102 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24940.1 | chr2:10609447-10609749 FORWARD LENGTH=101 139 4e-34
AT3G48890.1 | chr3:18129669-18131353 FORWARD LENGTH=234 115 3e-27
AT5G52240.1 | chr5:21213121-21214557 FORWARD LENGTH=221 115 7e-27
AT4G14965.1 | chr4:8551356-8553368 FORWARD LENGTH=246 69 4e-13
>AT2G24940.1 | chr2:10609447-10609749 FORWARD LENGTH=101
Length = 100
Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%)
Query: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
E TA QL Y+G+D SKPIYV+++G+V+DVT+G+ FYG GG Y++FAG++ASRALGKMSK
Sbjct: 2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSK 61
Query: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKYPVVARL 100
++ DVS L GL++KE+ L DWETKF+AKYPVV R+
Sbjct: 62 NEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRV 98
>AT3G48890.1 | chr3:18129669-18131353 FORWARD LENGTH=234
Length = 233
Score = 115 bits (289), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%)
Query: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
E+T +L+ YDGSD KP+ ++++G++YDV+ R FYGPGG YA+FAG++ASRAL KMS
Sbjct: 70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSF 129
Query: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKY 94
+D D++GD+SGL EL L DWE KF +KY
Sbjct: 130 EDQDLTGDISGLGAFELEALQDWEYKFMSKY 160
>AT5G52240.1 | chr5:21213121-21214557 FORWARD LENGTH=221
Length = 220
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 69/91 (75%)
Query: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
E+T +L+ YDGSDP KP+ ++++ ++YDVT R FYGPGG YA+FAG++ASRAL KMS
Sbjct: 74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 133
Query: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKY 94
++ D++ D+SGL EL L DWE KF +KY
Sbjct: 134 EEKDLTWDVSGLGPFELDALQDWEYKFMSKY 164
>AT4G14965.1 | chr4:8551356-8553368 FORWARD LENGTH=246
Length = 245
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%)
Query: 5 LTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSKD 64
+A +L Y+G+D + PI + + G V+DVT G+ YG GG Y FAGR+ASRA +
Sbjct: 42 FSAEELALYNGTDETLPILLGILGSVFDVTKGKFHYGSGGGYNHFAGRDASRAFVSGNFT 101
Query: 65 DADVSGDLSGLSDKELGVLADWETKFQAKYPVVARLT 101
++ L GLS E+ + DW + Y V +L
Sbjct: 102 GDGLTDSLQGLSSSEVKSIVDWRGFYSRTYTPVGKLV 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,231,935
Number of extensions: 86291
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 4
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)