BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0792800 Os02g0792800|AK105616
(539 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540 629 e-180
AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538 157 1e-38
AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560 132 5e-31
AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537 102 4e-22
>AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540
Length = 539
Score = 629 bits (1622), Expect = e-180, Method: Compositional matrix adjust.
Identities = 298/473 (63%), Positives = 345/473 (72%), Gaps = 1/473 (0%)
Query: 68 VLLPKEQEDDASAARYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLRCHE 127
VLL E+E A YDW EEWYPLYL K VP+DA L LTV+DRQ+VLY+D G LRC+E
Sbjct: 67 VLLNPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYE 126
Query: 128 DRCPHRLAKLSEGQLVDGKLECLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYEVRD 187
DRCPHRLAKLSEGQL+DG+LECLYHGWQF+GEGKCVKIPQLP AKIP+ AC ++YEV+D
Sbjct: 127 DRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKD 186
Query: 188 SQGVVWAWMSGTNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSILLENLMDPAHVPIS 247
SQGVVW WMS PP+ KLPWFE +ARPGF D+ST HELPYDHSILLENLMDPAHVPIS
Sbjct: 187 SQGVVWVWMSTKTPPNPEKLPWFENFARPGFFDISTTHELPYDHSILLENLMDPAHVPIS 246
Query: 248 HDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRT-PHLRNLLRFEAPCVLTNTLEFV 306
HDRTD+TAKREDAQPL FEVTER+ RGFAG WG+++ NLLRF+APCVL N EF
Sbjct: 247 HDRTDFTAKREDAQPLVFEVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNNREFE 306
Query: 307 DKDGKEQCFSAHFLCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYFHQNACKVFEQDMGF 366
KDG + FS FLCRP GQGKSML+VRFG T+ SPLV VLP+W++HQNACKVFEQDMGF
Sbjct: 307 GKDGVKNYFSGLFLCRPTGQGKSMLIVRFGVTKRSPLVSVLPQWFWHQNACKVFEQDMGF 366
Query: 367 LSSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGMPYYFGHSTLSXXXXXXX 426
LSSQNEVL++EKVPTK+LYLNL+SSDTWVAEYR+WMD+ GHGMPY+FGH T+S
Sbjct: 367 LSSQNEVLMKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHRTISLPKVPPV 426
Query: 427 XXXXXXXXXXGMSASFPAKGGVGATHAPNPTNRYFRHVVHCKGCRDSVKRYXXXXXXXXX 486
+SAS+PAKGG+G HAPN NRYFRH++HC+ C + +K +
Sbjct: 427 VEHAPAGLIAALSASYPAKGGIGTMHAPNLANRYFRHIIHCRSCSNVIKSFELWKNILSA 486
Query: 487 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNWVLSLITTNFIRTHRRL 539
C ++L T NFIRTHRRL
Sbjct: 487 TAVALTALAILVVSRQWKAVLLGSAALCSAAAYTCLRAINLNTNNFIRTHRRL 539
>AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538
Length = 537
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 183/383 (47%), Gaps = 57/383 (14%)
Query: 72 KEQEDDASAARYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGV-LRCHEDRC 130
KE+E + + WR+ WYP+ L +++ + P + R LVL+ D +D C
Sbjct: 75 KEEE----GSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLC 130
Query: 131 PHRLAKLSEGQL-VDGKLECLYHGWQFDGEGKCVKIPQLPD------GAKIPRNACARSY 183
PHRLA LSEG+L +G L+C YHGW F G G C +IPQ K PR ACA +
Sbjct: 131 PHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPR-ACAIKF 189
Query: 184 EVRDSQGVVWAW--------MSGTNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSILL 235
SQG+++ W + PP +LP + + +P F+ ++ +L Y + L+
Sbjct: 190 PTMVSQGLLFVWPDENGWDRANSIEPP---RLP--DDFDKPEFSTVTIQRDLFYGYDTLM 244
Query: 236 ENLMDPAHVPISHDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRTPHLRNLLRFEA 295
EN+ DP+H+ +H + T +R+ A+PL F+V P GF G +P R +F A
Sbjct: 245 ENVSDPSHIDFAHHKV--TGRRDRAKPLPFKVESSGPWGFQG--ANDDSP--RITAKFVA 298
Query: 296 PCVLTNTLEFVDKDGKEQCFSAH----FLCR---PAGQGKSMLLV-----RFGSTQTSPL 343
PC N +E D K ++C P GK+ +V F + P
Sbjct: 299 PCYSMNKIEL---DAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPA 355
Query: 344 -VKVLPRWYFHQNACKVFEQDMGFLSSQNEVLLREKVPTKELYLNLR---------SSDT 393
+V+PRWY H + V++ DM L Q +V L + + + + +N + +D
Sbjct: 356 WWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQADR 415
Query: 394 WVAEYRRWMDRAGHGMPYYFGHS 416
+V +R W+ R G P +FG +
Sbjct: 416 FVLAFRNWLRRHGKSQPEWFGST 438
>AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560
Length = 559
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 165/388 (42%), Gaps = 84/388 (21%)
Query: 82 RYDWREEWYPLY----LAKEVPDDAALPLTVFDRQLVLYRD-AAGVLRCHEDRCPHRLAK 136
++DW WYP+ L K+VP V LV++ D + +D CPHRLA
Sbjct: 78 KFDWYANWYPVMPICDLDKKVPHGK----KVMGIDLVVWWDRNEKQWKVMDDTCPHRLAP 133
Query: 137 LSEGQLVD-GKLECLYHGWQFDGEGKCVKIPQLP-DGAKIP--RNACARSYEVRDSQGVV 192
LS+G++ G+L+C+YHGW F+G G C IPQ P DG + + AC Y ++
Sbjct: 134 LSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEII 193
Query: 193 WAWMSG----TNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSILLENLMDPAHVPISH 248
W W + N + K P+ P FT L ++PY + +L+ENLMDPAHVP +H
Sbjct: 194 WFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVENLMDPAHVPYAH 253
Query: 249 ---------------------------------DRTDWTAKREDAQPLFFEVTERTPRGF 275
++ D RE +PL V + +GF
Sbjct: 254 YGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKID----REGGKPLEINVKKLDNKGF 309
Query: 276 AGY--WGKQRTPHLRNLLRFEAPCVLTNTLEFVDKDGKE--------------QCFSAHF 319
WG F APCV ++ + + + E + S F
Sbjct: 310 FSKQEWGYS---------NFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIF 360
Query: 320 LCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYFHQNACKVFEQDMGFLSSQNEVLLREKV 379
+C P G+S L+ F + K++PRW FH + + D+ L + +L E+
Sbjct: 361 ICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVEERKIL-ERG 419
Query: 380 P---TKELYLNLRSSDTWVAEYRRWMDR 404
P K ++ + SD V +RRW ++
Sbjct: 420 PENWQKACFIPTK-SDANVVTFRRWFNK 446
>AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537
Length = 536
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 41/339 (12%)
Query: 89 WYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLRCHEDRCPHRLAKLSEGQLVDGKLE 148
WYP+ ++ D +P+ F++ V++R G C + C HR L G + +G+++
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280
Query: 149 CLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYEVRDSQGVVWAWMSGTNPPDERKLP 208
C YHGW++ +G+C K+P K+ + +S + +G++W W G PP LP
Sbjct: 281 CPYHGWEYSTDGECKKMP----STKLLK-VKIKSLPCLEQEGMIWIW-PGDEPPAP-ILP 333
Query: 209 WFEPYARPGF-TDLSTVHELPYDHSILLENLMDPAHVPISHDRTDWTAKREDAQPLFFEV 267
+P + GF V +LP +H +LL+NL+D AH P +H T AK L +
Sbjct: 334 SLQPPS--GFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLVKFL 389
Query: 268 TERTPRGFAGYWGKQRTPHLRNLLRFEAPCVLTNTLEFVDKDGK------EQCFSAHF-- 319
T + G GYW P+ + + F+ PC++ +T+ + K GK +QC + H
Sbjct: 390 TPTS--GLQGYW----DPYPID-MEFKPPCIVLSTIG-ISKPGKLEGKSTQQC-ATHLHQ 440
Query: 320 --LCRPAGQGKSMLLVRFGSTQTSPLVKVLP--RWYFHQNACKVFEQDMGFLSSQNEVLL 375
+C P+ + K+ LL R S +P++K LP + A +V +D+ + Q E +L
Sbjct: 441 LHVCLPSSKNKTRLLYRM-SLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERML 499
Query: 376 REKVPTKELYLNLRSSDTWVAEYRRW---MDRAGHGMPY 411
++ + D YR W +DR +P+
Sbjct: 500 N----GANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,265,634
Number of extensions: 432241
Number of successful extensions: 727
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 4
Length of query: 539
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 436
Effective length of database: 8,282,721
Effective search space: 3611266356
Effective search space used: 3611266356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)