BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0788500 Os02g0788500|AK061452
         (240 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09250.2  | chr3:2839488-2840585 FORWARD LENGTH=247            220   4e-58
AT4G10925.1  | chr4:6702987-6704283 REVERSE LENGTH=232             67   7e-12

>AT3G09250.2 | chr3:2839488-2840585 FORWARD LENGTH=247
          Length = 246

 Score =  220 bits (561), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 136/174 (78%), Gaps = 1/174 (0%)

Query: 56  ANKVRTVHVKSGEAEGSPSTESITRDEETLQRDLQTAIQEENYAQAAKLRDELRVLQEDS 115
            +++R   VK  E   +   ESI+ DE TL++DL+TA+QEENY +AAK+RD+L+ LQED+
Sbjct: 47  CSRLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDN 106

Query: 116 RSAVLAANARFYNAFKNGDLVAMHSAWAKGDHVYVVHPSAGRISGYDMVMQSWEMVCDAD 175
           +++VL+AN+RFY +F+NGDL AM S W+K  +   VHP A  I+GYD VM+SWE+V   +
Sbjct: 107 KASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVW-MN 165

Query: 176 YEFPLQIDLQDVEVHVRGDLGYVTCLELVKTKGSSSWGRQVATNVFEKVDGKWF 229
           YEFPL I+L+DVEVHVRG++GYVTC+E VKTKGSSSWG Q  +NVFE++DG+W 
Sbjct: 166 YEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWL 219



>AT4G10925.1 | chr4:6702987-6704283 REVERSE LENGTH=232
          Length = 231

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 6/119 (5%)

Query: 118 AVLAANARFYNAFKNGDLVAMHSAWAKGDHVYVVHPSAGRISGYDMVMQSWEMVCDADYE 177
           A+++ N  F+   ++  L AM   W   D+V  +H S    SGY+ V+QSW++  + +  
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQG 166

Query: 178 FPLQIDLQDVEVHVRGDLGYVTCLELVKTKGSSSWGRQVATNVFEKVDGKWFICIHHAS 236
           F  Q+    V   +  D+ +VT    +   G    G  + TNVFE  +G+W +  HH+S
Sbjct: 167 FDFQV--HTVRTRILTDMAWVTMKAYLNVDG----GPFLITNVFEFHNGRWHMVHHHSS 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,402,962
Number of extensions: 173983
Number of successful extensions: 528
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 2
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)