BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0786000 Os02g0786000|Os02g0786000
(440 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576 94 2e-19
AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485 88 1e-17
AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344 58 1e-08
AT2G02650.1 | chr2:735411-736546 FORWARD LENGTH=366 57 2e-08
>AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576
Length = 575
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 149/376 (39%), Gaps = 67/376 (17%)
Query: 2 DCFHSKQMSNVSYTWRSIQKGLTVLQNGMIWRVGNGSKINIWADPWIP--------RGWS 53
D ++ S S+ W+SI +L+ G VGNG I IW W+ R
Sbjct: 97 DPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQR 156
Query: 54 RKPITPRGANLVTKVEELIDPYTGTWDDNMLSQTFWEEDVAAIKSI-PVHVEMEDVLAWH 112
P + + KV +LID W +++ F E + I + P + D W
Sbjct: 157 VPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWD 216
Query: 113 FDARGCFSVKSAYKVQREMERRASRNGCPGVSNGESGDDDFWKKLWKLGVPGKIKHFLWR 172
+ + G ++VKS Y V ++ + R+ VS E + ++K+WK KI+HFLW+
Sbjct: 217 YTSSGDYTVKSGYWVLTQIINK--RSSPQEVS--EPSLNPIYQKIWKSQTSPKIQHFLWK 272
Query: 173 MCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHLLFKCK-----------PVK----- 216
N+L + L +R + ++ C+ C E HLLFKC P+
Sbjct: 273 CLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEW 332
Query: 217 ---------------------------------KWWKERNEVREGGTPRSPAKLSHPIMS 243
+ WK RNE+ G + ++
Sbjct: 333 ADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED 392
Query: 244 RAGEF-VRMNAKD--KNPRTGECAVWRW--PPLNFVKINTDGTYRGNTKQGGWGFVIRDR 298
E+ +R A+ P+ + RW PP +VK NTD T+ + ++ G G+V+R+
Sbjct: 393 DLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNE 452
Query: 299 AGSILQAGAGPAAHLQ 314
G + GA L+
Sbjct: 453 KGEVKWMGARALPKLK 468
>AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485
Length = 484
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 138/360 (38%), Gaps = 68/360 (18%)
Query: 13 SYTWRSIQKGLTVLQNGMIWRVGNGSKINIWADPWIPRGWSRKPITPRGANLVTKVEELI 72
SY W S+ G+ +L+ G +G+G I I D I +P+ + L
Sbjct: 21 SYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN-IVDSHPPRPLNTEETYKEMTINNLF 79
Query: 73 DPYTGT--WDDNMLSQTFWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFSVKSAYKVQR 129
+ WDD+ +SQ + D I I + + D + W+++ G ++V+S Y +
Sbjct: 80 ERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWL-- 137
Query: 130 EMERRASRNGCPGVSNGESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGM 189
+ S N P + N G D ++W L + K+KHFLWR LA L RGM
Sbjct: 138 -LTHDPSTN-IPAI-NPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGM 194
Query: 190 DVDTRCVMCGQYNEDAGHLLFKC------------------------------------- 212
+D C C + NE H LF C
Sbjct: 195 RIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQD 254
Query: 213 -------KPVKKW-----WKERNEVREGGTPRSPAKLSHPIMSRAGEFVRMNAKDKNPRT 260
K + W WK RN V SP+K + ++A +NA + +T
Sbjct: 255 TTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTV--LSAKAETHDWLNATQSHKKT 312
Query: 261 -------GECAV-WRWPPLNFVKINTDGTYRGNTKQGGWGFVIRDRAGSILQAGAGPAAH 312
E + WR PP +VK N D + + G++IR+ G+ + G+ AH
Sbjct: 313 PSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH 372
>AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344
Length = 343
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 149 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHL 208
G + K+WKL KIKHFLW++ LA NL R + +C C Q +E + HL
Sbjct: 10 GKAEIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHL 69
Query: 209 LFKCKPVKKWWKERNEVREGGTPRSPAKLSHPIMSRAGEFVRMNA-KDKNPRTGECAVW 266
F C ++ W R G P + + M E + + ++ P+ A+W
Sbjct: 70 FFDCFYAQQVW------RASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIW 122
>AT2G02650.1 | chr2:735411-736546 FORWARD LENGTH=366
Length = 365
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 149 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHL 208
G + + +WKL V KIKHFLWR LA L R +D D C C E H+
Sbjct: 29 GSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHI 88
Query: 209 LFKCKPVKKWWKERNEV--REGGTPRS 233
+F C + W+ N + + G P S
Sbjct: 89 MFNCPYTQSVWRSANIIIGNQWGPPSS 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,521,313
Number of extensions: 467790
Number of successful extensions: 911
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 4
Length of query: 440
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,310,137
Effective search space: 2808826306
Effective search space used: 2808826306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)