BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0783700 Os02g0783700|AK120371
(560 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33150.1 | chr4:15985479-15991069 REVERSE LENGTH=1065 688 0.0
>AT4G33150.1 | chr4:15985479-15991069 REVERSE LENGTH=1065
Length = 1064
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/579 (60%), Positives = 428/579 (73%), Gaps = 23/579 (3%)
Query: 1 MYPSLXXXXXXXXXXXXXXXTFGLPSGICPIVFVFTGTGNVSQGAQEIFKLLPHSFVDAG 60
MY SL + GLP GICP+VFVFTGTGNVS GAQEIFKLLPH+FV+
Sbjct: 184 MYSSLAAAKAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPS 243
Query: 61 KLPELSAA-RSLSQHPQSSKRVFQLYGCVVSSRDMVTPKDPTRCFNKADYYAHPEHYKPV 119
KLPEL + +SQ+ S+KRV+Q+YGC+++S+DMV KDP++ F+KADYYAHPEHY PV
Sbjct: 244 KLPELFVKDKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPV 303
Query: 120 FHERIAPYASAIVNCMYWERRFPRLLSIDQLQQLMKNGCPLVGISDITCDIGGSIEFVNK 179
FHE+I+PY S +VNCMYWE+RFP LLS QLQ L K G PLVGI DITCDIGGSIEFVN+
Sbjct: 304 FHEKISPYTSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNR 363
Query: 180 STSIERPFFRYDPCTNSCHDDMEGNGVICLAVDILPTEFSKEASQHFGDILSKFVARLAS 239
+T I+ PFFR++P NS +DDM+G+GV+C+AVDILPTEF+KEASQHFGDILS FV LAS
Sbjct: 364 ATLIDSPFFRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLAS 423
Query: 240 AKELLELPSHLRKACIAHAGRLTSLYEYIPRMRKTIIELPPAPTNLLPD-----KKYNSL 294
E+ +LP+HL++ACI++ G LTSLYEYIPRMRK+ E A N++ + + +N L
Sbjct: 424 MTEISDLPAHLKRACISYRGELTSLYEYIPRMRKSNPE--EAQDNIIANGVSSQRTFNIL 481
Query: 295 VSLSGHLFDKFLINEALDIIETAGGSFHLIRCDVGQSIDDMSYSELEVGADDTATLDKII 354
VSLSGHLFDKFLINEALD+IE AGGSFHL +C++GQS D SYSELEVGADD LD+II
Sbjct: 482 VSLSGHLFDKFLINEALDMIEAAGGSFHLAKCELGQSADAESYSELEVGADDKRVLDQII 541
Query: 355 DSLTSLANAHGD---PNARREIELSLKIGKV---NECGTDDSMAKEGSKVLILGAGRVCR 408
DSLT LAN + D P+ R ++SLKIGKV NE M K+ S VLILGAGRVCR
Sbjct: 542 DSLTRLANPNEDYISPH-REANKISLKIGKVQQENEIKEKPEMTKK-SGVLILGAGRVCR 599
Query: 409 PAAEFLASYSNIFSSSAY-------DHDIDQIHVIVASLYQKDAEETIDGIRNATAAQLD 461
PAA+FLAS I S Y + +HVIVASLY KDA+ET++GI + A +LD
Sbjct: 600 PAADFLASVRTISSQQWYKTYFGADSEEKTDVHVIVASLYLKDAKETVEGISDVEAVRLD 659
Query: 462 VADIKNXXXXXXXXXXXXXXXPASFHAAIARVCIEMKKHLVTASYVDESMSKLEQSAEGA 521
V+D ++ PAS HA +A+ CIE+KKHLVTASYVD+ S L + A+ A
Sbjct: 660 VSDSESLLKYVSQVDVVLSLLPASCHAVVAKTCIELKKHLVTASYVDDETSMLHEKAKSA 719
Query: 522 GVTILCEMGLDPGIDHMMSMKMIDEAHSRKGKIKSFTSF 560
G+TIL EMGLDPGIDHMM+MKMI++AH +KGK+KSFTS+
Sbjct: 720 GITILGEMGLDPGIDHMMAMKMINDAHIKKGKVKSFTSY 758
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,373,276
Number of extensions: 466467
Number of successful extensions: 1110
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1106
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 456
Effective length of database: 8,255,305
Effective search space: 3764419080
Effective search space used: 3764419080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)