BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0780600 Os02g0780600|AK121526
         (339 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52210.3  | chr3:19367035-19369293 FORWARD LENGTH=356          425   e-119
AT3G20650.1  | chr3:7221168-7223939 REVERSE LENGTH=371            100   2e-21

>AT3G52210.3 | chr3:19367035-19369293 FORWARD LENGTH=356
          Length = 355

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/339 (61%), Positives = 255/339 (75%), Gaps = 5/339 (1%)

Query: 6   HHRLYEFAKTALIKIFAFPYATVCDLYCDGGVDTDKWGDAQIGHYIGIDASASGVNDARE 65
           HHRL++FAKTA+I IFA PYATVC+LYC G  +TDKW  A IGHYIGI  ++SG++  RE
Sbjct: 13  HHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGIVDTSSGISSVRE 72

Query: 66  LWESRKKLFTSEFIELDPSADDFEAQMQEKGIQADIVCCMQHLQLCFESEEHAQKLLNNV 125
            WES++K +  EF E DPS DDFE Q+Q+K  QAD+V C +HLQLCFE+EE A++LL NV
Sbjct: 73  AWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFETEESARRLLTNV 132

Query: 126 SSLLKPGGYFVGIIPDSSTIWTKYQKNVEASHNK-GLK--TVPNSIRSENYVITFEVEEE 182
           + LLKPGGYF GI PDSSTIW KYQKNVEA HN+ G K    PN IRSE+Y+ITFE+EEE
Sbjct: 133 ACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGAKPNVFPNYIRSESYMITFELEEE 192

Query: 183 KFPFFGKKYQLKFANESMFENHCLVHFPSFMRLAREAGLEYVEIQNLTEFYDDNRTQFAP 242
           KFP FGK+YQLKF+ ++  E+HCLVHFPS +RLAREAGLE+VEIQ+LT+FYDDNR QFA 
Sbjct: 193 KFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSLTDFYDDNRAQFAS 252

Query: 243 LLGGYGSSLVDPRGKLVARSFDILGLYSTFVFQKPDPDAMPPIVTPELHDPENDQEEEWL 302
           LL   G + VDPRGKL+ R+FD+LGLY+TF+FQKPDPD  PP+ TP   +  N+ +E  L
Sbjct: 253 LLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPIPFESSNNHDEREL 312

Query: 303 WTQQASMDDGRVSR--TDILPPADNEKGILGPGPADMRL 339
                  D    +   +  L     +KGILGPGPAD+R 
Sbjct: 313 PVITVITDASAPAEDPSQGLGKIVEQKGILGPGPADLRF 351



>AT3G20650.1 | chr3:7221168-7223939 REVERSE LENGTH=371
          Length = 370

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 38/290 (13%)

Query: 8   RLYEFAKTALIKIFAFPYATVCDLYCDGGVDTDKWGDAQIGHYIGIDASASGVNDARELW 67
           +L  + K+ LI+++A P   V DL C  G D  KW  A+IG+Y+GID +   + D R  +
Sbjct: 68  KLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRY 127

Query: 68  -------ESRKKL-FTSEFIELDPSADDFEAQMQ---EKGIQADIVCCMQHLQLCFESEE 116
                  + RKK  F S  +      D FE ++    E+    DI  C   +   + +E 
Sbjct: 128 NGDADHHQRRKKFSFPSRLL----CGDCFEVELDKILEEDAPFDICSCQFAMHYSWTTEA 183

Query: 117 HAQKLLNNVSSLLKPGGYFVGIIPDSSTIWTKYQKNVEASHNKGLKTVPNSIRSENYVIT 176
            A++ L NVS+LL+PGG F+G +PD++ I  K ++       +GL+ + NS+    Y I 
Sbjct: 184 RARRALANVSALLRPGGVFIGTMPDANVIIKKLRE------AEGLE-IGNSV----YWIR 232

Query: 177 F--EVEEEKFPF---FGKKYQLKFANESMFENHCLVHFPSFMRLAREAGLEYVEIQNLTE 231
           F  E  ++KF     FG +Y      +++     +V F  F  LA E  LE V ++N  E
Sbjct: 233 FGEEYSQKKFKSSSPFGIEYVFHL-EDAVDCPEWIVPFNVFKSLAEEYDLELVFVKNSHE 291

Query: 232 FYDD--NRTQFAPL---LGGYGSSLVDPRGKLVARSFDILGLYSTFVFQK 276
           F  +   + +F  L   LG  G    D +  L A  ++   LY +FV +K
Sbjct: 292 FVHEYMKKPEFVELMRRLGALGDGSND-QSTLSADEWEAAYLYLSFVLRK 340



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,259,925
Number of extensions: 373417
Number of successful extensions: 1003
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)