BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0775600 Os02g0775600|AK068762
(279 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258 103 1e-22
AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254 84 8e-17
AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192 70 1e-12
AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245 70 2e-12
AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198 66 2e-11
AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273 59 2e-09
AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210 58 5e-09
AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236 58 5e-09
AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261 58 7e-09
AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229 56 2e-08
AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162 55 5e-08
AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279 52 4e-07
AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216 52 5e-07
AT5G05120.1 | chr5:1511232-1511837 FORWARD LENGTH=202 51 6e-07
AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151 51 6e-07
>AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258
Length = 257
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 93/218 (42%), Gaps = 48/218 (22%)
Query: 9 SVDSFSQLPFIRXXXXXXXXXRDTIRLFGCEF----SNDLQLRPTEAGAGSPDAANGSTV 64
+V+SFSQLPFIR IRLFG E S++L P++ + + + +
Sbjct: 17 NVESFSQLPFIRRTPPKEKAA--IIRLFGQELVGDNSDNLSAEPSDHQTTTKNDESSENI 74
Query: 65 TXXXXXXXXXXXXXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHL 124
R+FECHYC RNFPTSQALGGHQNAHKRERQHAKR +
Sbjct: 75 KDKDKEKDKDKDKDNNNN-----RRFECHYCFRNFPTSQALGGHQNAHKRERQHAKRGSM 129
Query: 125 QASL-AMHRYMPGHMYGLFNYHHHIGGRFDHHXXXXXXXXXXAHYPMWTXX--------- 174
+ L + P H+YG N HHH HYP WT
Sbjct: 130 TSYLHHHQPHDPHHIYGFLNNHHH------------------RHYPSWTTEARSYYGGGG 171
Query: 175 -------XXXXXXXXXXXXQPINGSPVQAGLWSVPPPT 205
INGSP+ GLW VPP T
Sbjct: 172 HQTPSYYSRNTLAPPSSNPPTINGSPL--GLWRVPPST 207
>AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254
Length = 253
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 5 QDMRSVDSFSQLPFIRXXXXXXXXXRDTIRLFGCEFS-NDLQLRPTEAGAGSPDAANGST 63
QD +V+SFSQLPFIR IR+FG +F+ D + + P
Sbjct: 11 QDFMNVESFSQLPFIRRPKDKNPKP---IRVFGKDFTGRDFSITTGQEDYTDPYQTKNKE 67
Query: 64 VTXXXXXXXXXXXXXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 122
R+FECHYC RNFPTSQALGGHQNAHKRERQ AKR
Sbjct: 68 EEEEEDQTGDNSTDNNSISHN---RRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRG 123
>AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192
Length = 191
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLA 129
++F+CHYC RNFPTSQALGGHQNAHKRERQ KR +L ++ A
Sbjct: 53 KRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAA 94
>AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245
Length = 244
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 33/40 (82%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQAS 127
RK+EC YCCR F SQALGGHQNAHK+ERQ KRA LQA+
Sbjct: 71 RKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQAT 110
>AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198
Length = 197
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLAMHRY 133
RK+EC YCCR F SQALGGHQNAHK+ERQ KRA + A+ + R+
Sbjct: 39 RKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMLATRGLPRH 84
>AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273
Length = 272
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLAMHRYMPGHMYGL 141
+ F C+YC R F +SQALGGHQNAHKRER AKR AS A GH YG
Sbjct: 102 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMASAAAF----GHPYGF 151
>AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210
Length = 209
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 37/60 (61%), Gaps = 14/60 (23%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLAMHRYMPGHMYGLFNYHHH 147
R F C+YC R F +SQALGGHQNAHKRER AKR AMH G M+G HHH
Sbjct: 57 RVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKR-------AMHM---GRMFG----HHH 102
>AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236
Length = 235
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLAM-----HRYMPGHMYGLF 142
+ F C+YC R F +SQALGGHQNAHKRER AKR A+ A + + P +G +
Sbjct: 59 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSPLPFHGQY 118
Query: 143 NYHHHIG 149
N H +G
Sbjct: 119 NNHRSLG 125
>AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261
Length = 260
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 122
R F C+YC R F +SQALGGHQNAHKRER AKRA
Sbjct: 83 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRA 117
>AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229
Length = 228
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKR 121
R F C+YC R F +SQALGGHQNAHKRER AKR
Sbjct: 66 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99
>AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162
Length = 161
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 26/34 (76%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKR 121
R F C YC R F TSQALGGHQNAHKRER A+R
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69
>AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279
Length = 278
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 90 FECHYCCRNFPTSQALGGHQNAHKRERQ-HAKRAHLQA 126
+ CH+C + F TSQALGGHQNAHK+ER+ KR ++A
Sbjct: 80 YTCHFCKKGFSTSQALGGHQNAHKQEREWDKKRKEMEA 117
>AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216
Length = 215
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKR 121
R F C +C + F TSQALGGHQNAHK+ER AKR
Sbjct: 65 RVFACTFCKKEFSTSQALGGHQNAHKQERSLAKR 98
>AT5G05120.1 | chr5:1511232-1511837 FORWARD LENGTH=202
Length = 201
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 90 FECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLA-MHRYMPGHMYGLFNYHHHI 148
++C YC R F +QALGGHQNAH++ER+ K+ +A LA ++R P ++YHH
Sbjct: 27 YKCKYCPRKFDKTQALGGHQNAHRKEREVEKQQ--KAFLAHLNRPEPDLYAYSYSYHHSF 84
Query: 149 GGRF 152
++
Sbjct: 85 PNQY 88
>AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151
Length = 150
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 122
R F C+YC R F +SQALGGHQNAHK ER AK++
Sbjct: 50 RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKS 84
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,664,594
Number of extensions: 139295
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 17
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)