BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0775100 Os02g0775100|AK110750
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58060.1 | chr3:21497778-21499676 REVERSE LENGTH=412 274 3e-74
AT1G79520.2 | chr1:29912369-29914515 REVERSE LENGTH=415 228 1e-60
AT1G16310.1 | chr1:5578435-5580585 FORWARD LENGTH=429 224 3e-59
AT2G39450.1 | chr2:16471744-16473735 REVERSE LENGTH=395 169 8e-43
>AT3G58060.1 | chr3:21497778-21499676 REVERSE LENGTH=412
Length = 411
Score = 274 bits (700), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 129/202 (63%), Positives = 156/202 (77%), Gaps = 1/202 (0%)
Query: 1 QLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXX 60
QL+ N+ EKM QLIWLYSIMLSAT +KL L+IYC+SS N IV+AYAKDH+FD
Sbjct: 208 QLISNEPSEKMNHVQLIWLYSIMLSATAIKLVLWIYCKSSRNHIVRAYAKDHHFDVVTNV 267
Query: 61 XXXXXXXXXDKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLA 120
+ F+WW+DP GA+LLA+YTIVNWSGTV ENAV+L+GQ AP ++LQKLTYL
Sbjct: 268 LGLVAAVLANAFYWWLDPTGAILLAIYTIVNWSGTVMENAVSLIGQSAPPEVLQKLTYLV 327
Query: 121 MKH-DPRVRRVDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERA 179
M+ ++ VDTVRAY+FG LYFVEVDIEL ED+ L EAH+IGESLQ K+E+LPEVERA
Sbjct: 328 MRQGGDNIKHVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGESLQIKLEELPEVERA 387
Query: 180 FVHVDFESTHKPEHRVRSRLPS 201
FVH+DFE HKPEH V S +P+
Sbjct: 388 FVHLDFECHHKPEHSVLSTIPN 409
>AT1G79520.2 | chr1:29912369-29914515 REVERSE LENGTH=415
Length = 414
Score = 228 bits (582), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%)
Query: 1 QLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXX 60
+L+ +K G M+ + W+ IM SATVVK L +YCRS N IV+AYA+DH FD
Sbjct: 218 RLLVSKNGSHMSSTEEKWMIGIMASATVVKFLLMLYCRSFQNEIVRAYAQDHLFDVITNS 277
Query: 61 XXXXXXXXXDKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLA 120
KF+WWIDP GA+L+A+YTI W+ TV EN +L+G+ AP D L KLT+L
Sbjct: 278 VGLATAVLAVKFYWWIDPSGAILIALYTISTWARTVLENVHSLIGRSAPPDFLAKLTFLI 337
Query: 121 MKHDPRVRRVDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAF 180
H +++ +DTVRAY+FG+ YFVEVDI L EDMRL EAH+IGE+LQ+K+E+L EVERAF
Sbjct: 338 WNHHEKIKHIDTVRAYTFGSHYFVEVDIVLPEDMRLHEAHNIGETLQEKLEQLSEVERAF 397
Query: 181 VHVDFESTHKPEHRVR 196
VH+DFE TH+PEH+ +
Sbjct: 398 VHIDFEFTHRPEHKCK 413
>AT1G16310.1 | chr1:5578435-5580585 FORWARD LENGTH=429
Length = 428
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%)
Query: 1 QLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXX 60
QLV K+G M + W+ IM+S T+VK L +YCR N IV+AYA+DH FD
Sbjct: 234 QLVA-KSGIHMNSTEEKWMIGIMVSVTIVKFLLMLYCRGFQNEIVRAYAQDHLFDVVTNS 292
Query: 61 XXXXXXXXXDKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLA 120
KF+WWIDP GA+L+A+YTI W+ TV EN +L+G+ AP D L KLT+L
Sbjct: 293 IGLATAVLAVKFYWWIDPTGAILIALYTIATWARTVLENVHSLIGRSAPPDFLAKLTFLI 352
Query: 121 MKHDPRVRRVDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAF 180
H +++ +DTVRAY+FG+ YFVEVDI L EDMRL EAH+IGE+LQ+K+E+L EVERAF
Sbjct: 353 WNHHEQIKHIDTVRAYTFGSHYFVEVDIVLPEDMRLQEAHNIGETLQEKLEQLAEVERAF 412
Query: 181 VHVDFESTHKPEHR 194
VH+DFE TH+PEH+
Sbjct: 413 VHIDFEFTHRPEHK 426
>AT2G39450.1 | chr2:16471744-16473735 REVERSE LENGTH=395
Length = 394
Score = 169 bits (429), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 127/184 (69%)
Query: 10 KMTPEQLIWLYSIMLSATVVKLALYIYCRSSGNSIVQAYAKDHYFDXXXXXXXXXXXXXX 69
+T EQ W+ IMLS T+VKL L +YCRS N IV+AYA+DH+FD
Sbjct: 206 NLTKEQESWVVGIMLSVTLVKLLLVLYCRSFTNEIVKAYAQDHFFDVITNIIGLIAVILA 265
Query: 70 DKFFWWIDPVGAVLLAVYTIVNWSGTVYENAVTLVGQCAPSDMLQKLTYLAMKHDPRVRR 129
+ +WIDPVGA++LA+YTI WS TV EN +LVG+ A + LQKLTYL H +R
Sbjct: 266 NYIDYWIDPVGAIILALYTIRTWSMTVLENVNSLVGKSARPEYLQKLTYLCWNHHKAIRH 325
Query: 130 VDTVRAYSFGALYFVEVDIELSEDMRLGEAHSIGESLQDKIEKLPEVERAFVHVDFESTH 189
+DTVRAY+FG+ YFVEVDI L DM L AH IGESLQ+K+E L E+ERAFVH+D+E TH
Sbjct: 326 IDTVRAYTFGSHYFVEVDIVLPADMPLQVAHDIGESLQEKLELLEEIERAFVHLDYEYTH 385
Query: 190 KPEH 193
KPEH
Sbjct: 386 KPEH 389
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,952,803
Number of extensions: 139443
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)