BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0770000 Os02g0770000|AK103425
(246 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31300.2 | chr4:15188927-15190935 FORWARD LENGTH=235 362 e-101
AT5G40580.1 | chr5:16248511-16250451 REVERSE LENGTH=275 96 1e-20
AT3G27430.2 | chr3:10152910-10155052 FORWARD LENGTH=274 96 2e-20
AT3G26340.1 | chr3:9650600-9652572 REVERSE LENGTH=274 72 4e-13
AT1G13060.2 | chr1:4452641-4454663 FORWARD LENGTH=299 65 4e-11
AT3G60820.1 | chr3:22472038-22473809 REVERSE LENGTH=224 61 5e-10
AT3G22630.1 | chr3:8009709-8010774 REVERSE LENGTH=205 48 4e-06
>AT4G31300.2 | chr4:15188927-15190935 FORWARD LENGTH=235
Length = 234
Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/224 (76%), Positives = 193/224 (86%), Gaps = 1/224 (0%)
Query: 22 HRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVIS 81
H MGTTI+GV Y+GGVVL ADSRTSTGMYVANRASDKITQLTDNVY+CRSGSAAD+QV+S
Sbjct: 9 HSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVS 68
Query: 82 DYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNK-NMLQAGMIVGGWDKYEGGQIFSVP 140
DYVRYFLHQHTIQ GQPATVKV+ANLIR+LAY NK NMLQ G+IVGGWDKYEGG+I+ +P
Sbjct: 69 DYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKQNMLQTGLIVGGWDKYEGGKIYGIP 128
Query: 141 LGGTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVR 200
LGGT++ QPFAI D WK+ M++EEAE+ VVK VSLAIARDGASGGVVR
Sbjct: 129 LGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVR 188
Query: 201 TVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGNPDPM 244
TV IN++GV+R F+PGDKLQLWHEELEPQNSLLDIL A P+PM
Sbjct: 189 TVIINSEGVTRNFYPGDKLQLWHEELEPQNSLLDILNAAGPEPM 232
>AT5G40580.1 | chr5:16248511-16250451 REVERSE LENGTH=275
Length = 274
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 1/183 (0%)
Query: 23 RMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISD 82
+ GTTIVG+ + GV+L AD+R + G VA++ +KI + N+Y C +G+AADT+ ++D
Sbjct: 37 KTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 96
Query: 83 YVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLG 142
V L H Q G+ + V A L++ + + + A +++GG D G + ++
Sbjct: 97 MVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPH 155
Query: 143 GTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTV 202
G+ PFA + ++KEG++++E K V + + I D SG V
Sbjct: 156 GSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDIC 215
Query: 203 TIN 205
I
Sbjct: 216 VIT 218
>AT3G27430.2 | chr3:10152910-10155052 FORWARD LENGTH=274
Length = 273
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 1/183 (0%)
Query: 23 RMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISD 82
+ GTTIVG+ + GV+L AD+R + G VA++ +KI + N+Y C +G+AADT+ ++D
Sbjct: 37 KTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 96
Query: 83 YVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLG 142
V L H Q G+ + V A L++ + + + A +++GG D G + ++
Sbjct: 97 MVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPH 155
Query: 143 GTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTV 202
G+ PFA + ++KEG++++E K V + + I D SG V
Sbjct: 156 GSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDIC 215
Query: 203 TIN 205
I
Sbjct: 216 VIT 218
>AT3G26340.1 | chr3:9650600-9652572 REVERSE LENGTH=274
Length = 273
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 4/205 (1%)
Query: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYV 84
GTT + + GV++AADSR S G Y+++++ KI ++ + +G AAD Q +
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 116
Query: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNM-LQAGMIVGGWDKYEGGQIFSVPLGG 143
H + + +V A+ L+ + Y + M L G ++ GWD+ G + GG
Sbjct: 117 GIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGG 176
Query: 144 TILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVT 203
+ F++ D +K MS EEA + + + A RDGASGGV
Sbjct: 177 RLKGDRFSV-GSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYH 235
Query: 204 INADGVSRKFHPGDKLQLWHEELEP 228
+ G ++ GD + H P
Sbjct: 236 VGPQGWTKL--SGDDVGELHYHYYP 258
>AT1G13060.2 | chr1:4452641-4454663 FORWARD LENGTH=299
Length = 298
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 28/233 (12%)
Query: 21 EHRMGTTIVGVCYDGGVVLAADSRTSTGMYVA---------------------NRASDKI 59
+H GTT + + GGV++AADSR S G Y++ N S +
Sbjct: 53 KHAKGTTTLAFIFKGGVMVAADSRASMGGYISVSSLKNSSKNMHPFDIVDFGRNTTSQSV 112
Query: 60 TQLTD-NVYI--CRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNK 116
++ + N Y+ +G AAD Q + H + + +V A+ L+ + Y +
Sbjct: 113 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYR 172
Query: 117 NM-LQAGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQE 175
M L G ++ GWD+ G + GG + F++ D +K MS E
Sbjct: 173 GMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVE 231
Query: 176 EAEKFVVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEP 228
EA + + + A RDGASGGV + +G ++ GD + H P
Sbjct: 232 EASELARRSIYHATFRDGASGGVASVYHVGPEGWTKL--SGDDVGELHYHYYP 282
>AT3G60820.1 | chr3:22472038-22473809 REVERSE LENGTH=224
Length = 223
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 26/205 (12%)
Query: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYV 84
G T V + V+AAD+R STG + +R KI +L D + SG AD + + +
Sbjct: 15 GGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVL 74
Query: 85 R----YFLHQHTIQLGQPATVKVAANLI---RLLAYQNKNMLQAGMIVGGWDKYEGGQIF 137
+ + HQH Q+ PA ++ +N + R Y N+L GG D+ G +F
Sbjct: 75 KSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVL------GGLDEEGKGCVF 128
Query: 138 SVPL-------------GGTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKV 184
+ G+ L PF + +S+ EA V V
Sbjct: 129 TYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTV 188
Query: 185 VSLAIARDGASGGVVRTVTINADGV 209
+ A RD +G + + + ADG+
Sbjct: 189 FASATERDIYTGDKLEIMILKADGI 213
>AT3G22630.1 | chr3:8009709-8010774 REVERSE LENGTH=205
Length = 204
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 2/160 (1%)
Query: 28 IVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYF 87
+ G+ +G ++AAD+ + + DKI L + + SG D ++YV+
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 88 LHQHTIQLGQPATVKVAANLIR--LLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTI 145
+ + + G P T AAN R L KN +++ G+D G ++ + T+
Sbjct: 64 VSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYIATL 123
Query: 146 LRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVV 185
+ D ++ MS EEA + V K +
Sbjct: 124 HKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCI 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,927,621
Number of extensions: 179996
Number of successful extensions: 472
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 8
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)