BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0769100 Os02g0769100|AK107987
(128 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53590.1 | chr5:21772107-21772535 FORWARD LENGTH=143 59 5e-10
AT2G46690.1 | chr2:19180904-19181269 FORWARD LENGTH=122 57 3e-09
AT4G00880.1 | chr4:366692-367060 REVERSE LENGTH=123 54 3e-08
AT3G61900.1 | chr3:22925813-22926379 FORWARD LENGTH=137 50 3e-07
AT3G43120.1 | chr3:15094644-15095312 FORWARD LENGTH=161 49 6e-07
AT5G20810.2 | chr5:7044791-7045363 FORWARD LENGTH=191 49 8e-07
AT4G34770.1 | chr4:16591352-16591666 FORWARD LENGTH=105 47 2e-06
AT3G60690.1 | chr3:22435262-22435774 FORWARD LENGTH=171 46 7e-06
AT4G12410.1 | chr4:7342956-7343429 REVERSE LENGTH=158 45 7e-06
AT4G22620.1 | chr4:11907631-11908113 FORWARD LENGTH=161 45 9e-06
>AT5G53590.1 | chr5:21772107-21772535 FORWARD LENGTH=143
Length = 142
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLRSLVERETH 89
+P+ +L HPLF LL+ A YG+ GP+ +PC VDEF ++ +++ ETH
Sbjct: 69 VPLVFLSHPLFLDLLKEAEKEYGFKHDGPITIPCGVDEFKHVQEVIDEETH 119
>AT2G46690.1 | chr2:19180904-19181269 FORWARD LENGTH=122
Length = 121
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLRSLVERE 87
+P+ Y HPLF +LL+ A D YG+D G + +PC V+EF +++L++ E
Sbjct: 45 VPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEEFRYVQALIDGE 93
>AT4G00880.1 | chr4:366692-367060 REVERSE LENGTH=123
Length = 122
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLRSLVERET 88
IP+ Y HPLF +LL+ A + +G+ G + +PC V+EF ++ L++RE
Sbjct: 48 IPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHVEEFRYVQGLIDREN 97
>AT3G61900.1 | chr3:22925813-22926379 FORWARD LENGTH=137
Length = 136
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLRSLVERE 87
+P+ Y HPLF +LL A + YG++ G + +PC V+ F ++ ++ RE
Sbjct: 51 VPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVEVFRYVQDMINRE 99
>AT3G43120.1 | chr3:15094644-15095312 FORWARD LENGTH=161
Length = 160
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLRSLVER 86
IP +L H LF+ LLE A + YG+D +G L +PC V+ F L +E
Sbjct: 97 IPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETFKYLLKCIEN 144
>AT5G20810.2 | chr5:7044791-7045363 FORWARD LENGTH=191
Length = 190
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLRSLVERE 87
IP +YL H LF+ LLE A + +G+D +G L +PC V+ F L +E
Sbjct: 97 IPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLLKCMENN 145
>AT4G34770.1 | chr4:16591352-16591666 FORWARD LENGTH=105
Length = 104
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDS-AGPLRLPCSVDEFLRLRSLV 84
IPI+YL HPLF+ LL A + +G+D G L +PC+ D F L S++
Sbjct: 55 IPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFTALASIL 101
>AT3G60690.1 | chr3:22435262-22435774 FORWARD LENGTH=171
Length = 170
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLRSLVE 85
+PI Y HPLF LL A + +G+ G + +PC +F R+++ +E
Sbjct: 109 VPIVYFNHPLFGELLREAEEEFGFSQEGGITIPCPYSDFKRVQTRIE 155
>AT4G12410.1 | chr4:7342956-7343429 REVERSE LENGTH=158
Length = 157
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLR 81
+P+ Y HPLF LLE A +G+D G + +PC V +F +++
Sbjct: 97 VPVIYFNHPLFGELLEQAERVHGFDQPGRITIPCRVSDFEKVQ 139
>AT4G22620.1 | chr4:11907631-11908113 FORWARD LENGTH=161
Length = 160
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 39 IPIAYLYHPLFRRLLEAARDAYGYDSAGPLRLPCSVDEFLRLR 81
+P+ Y HPLF LLE A YG++ G + +PC V +F +++
Sbjct: 100 VPVIYFNHPLFGELLEQAERVYGFEQPGRIMIPCRVSDFEKVQ 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,298,512
Number of extensions: 31484
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 10
Length of query: 128
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 41
Effective length of database: 8,721,377
Effective search space: 357576457
Effective search space used: 357576457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)