BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0767700 Os02g0767700|AK071237
         (321 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44835.2  | chr1:16939909-16942337 FORWARD LENGTH=309          306   1e-83

>AT1G44835.2 | chr1:16939909-16942337 FORWARD LENGTH=309
          Length = 308

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 164/305 (53%), Positives = 207/305 (67%), Gaps = 5/305 (1%)

Query: 1   MGYTKEQLLARLQELNIEFSCYDHPVVLTVEEQAKHVGHLGGALSKNLLLKDKKHRLYVV 60
           MG+TK+QLL RLQEL I++S Y+HP VLTVEEQAK+V    GALSKNL LKDKKHR Y+V
Sbjct: 1   MGFTKDQLLDRLQELEIDYSKYEHPPVLTVEEQAKYVSSSKGALSKNLFLKDKKHRYYIV 60

Query: 61  SALAGTKVDMKILSQRLGLGKGGLRMAPEENLLEVLQVPLGCVTPFALLNESASAVSLLL 120
           SA+  TKVDMK+LSQRLGLGKGG+RMAPEE L E+LQV LGCVTPFA++NESA  VSLLL
Sbjct: 61  SAMVDTKVDMKVLSQRLGLGKGGIRMAPEEALGELLQVSLGCVTPFAVVNESARDVSLLL 120

Query: 121 DQGFKSKQSCYFHPLTNDVTIALSSSNLDKFLMSIGRQPAYVDLEASPVVGKDNPPDLAD 180
           DQ FK++  C FHPL+NDV+++L++  LDKFL SIGR P YVDLEA+PVVGKD  PDLA 
Sbjct: 121 DQKFKNQTRCIFHPLSNDVSVSLNTLGLDKFLKSIGRDPVYVDLEANPVVGKDQAPDLAV 180

Query: 181 FVPSGVPNSAEPIEKVTPTNVPRQNDVPKEKTCLPVKAKPKVQNKGAEKTQSKIPTNGAN 240
            VPS      E   + + T +P    V  E   +      K   K     ++  P+   N
Sbjct: 181 CVPSNSVIVPEIPNQTSSTQIPLPKSVSAEVKPVASAKTSKPACKVKSVAENSAPSAYKN 240

Query: 241 VEKFVNDVFDIMSPLFLSEVSKKLNVKQEELSSIFDGFKEQATIDLESVTTSLKNAAYTA 300
            EKFV ++ D  S L LSEV+K      E + ++ +  +++ T +L  ++   KN+AY  
Sbjct: 241 PEKFVQEILDKTSALLLSEVAKG-----ECVEALAETLRKRLTSELTHLSIMYKNSAYAE 295

Query: 301 GFEAG 305
           GF AG
Sbjct: 296 GFYAG 300



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,811,431
Number of extensions: 292000
Number of successful extensions: 677
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,392,385
Effective search space: 1863109470
Effective search space used: 1863109470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)