BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0761700 Os02g0761700|AK068344
(370 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37040.1 | chr4:17455175-17457085 FORWARD LENGTH=351 497 e-141
AT1G13270.1 | chr1:4544999-4547155 FORWARD LENGTH=370 363 e-100
AT3G25740.1 | chr3:9397806-9399653 FORWARD LENGTH=345 327 5e-90
AT2G45240.1 | chr2:18656059-18658906 FORWARD LENGTH=399 260 7e-70
>AT4G37040.1 | chr4:17455175-17457085 FORWARD LENGTH=351
Length = 350
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/369 (66%), Positives = 280/369 (75%), Gaps = 26/369 (7%)
Query: 4 SSSPRLLSSFLGDXXXXXXX-XXXXXXXXXGSRRAAYQATRTLCNLVDILFNRGQSDKPE 62
S PRL+SSFLG+ G R + Q +RT L D+LFNR D+
Sbjct: 6 SLQPRLISSFLGNNSIRSTQPLIHLFRFDLGRRHVSMQLSRTFSGLTDLLFNRRNEDEVI 65
Query: 63 DNPR-RLRPGKVSPRLSVPKHIQRPPYVNARQRPGLHNGPEIHDERGIECMRASGKLAAQ 121
D R RLRPG VSPR VP HI +PPYV++ Q PG+ +G E+HD++GIECMRASG LAA+
Sbjct: 66 DGKRKRLRPGNVSPRRPVPGHITKPPYVDSLQAPGISSGLEVHDKKGIECMRASGILAAR 125
Query: 122 VLKFAGTLVEPGITTDEIDKAVHQMIVDNGAYPSPLGYCGFPKSVCTSVNECICHGIPDS 181
V +AGTLV+PG+TTDEID+AVH MI++NGAYPSPLGY GFPKSVCTSVNECICHGIPDS
Sbjct: 126 VRDYAGTLVKPGVTTDEIDEAVHNMIIENGAYPSPLGYGGFPKSVCTSVNECICHGIPDS 185
Query: 182 RPLEDGDIINIDVTVYLNRVFLCISSLYLHKCQSMTMVAGQLGYHGDTSATFLCGNVDDK 241
RPLEDGDIINIDVTVYLN GYHGDTSATF CGNVD+K
Sbjct: 186 RPLEDGDIINIDVTVYLN------------------------GYHGDTSATFFCGNVDEK 221
Query: 242 AKKLVQVTRECLDKAISICAPGVEIKRIGRTIQDHADKFKFGVVRQFVGHGVGQVFHAEP 301
AKKLV+VT+E LDKAISIC PGVE K+IG+ I D ADK K+GVVRQFVGHGVG VFHA+P
Sbjct: 222 AKKLVEVTKESLDKAISICGPGVEYKKIGKVIHDLADKHKYGVVRQFVGHGVGSVFHADP 281
Query: 302 VVLHFRNNEWGRMTLNQTFTIEPMLTVGSVNPVIWSDDWTAVTEDGSLSAQFEHTILITE 361
VVLHFRNNE GRM LNQTFTIEPMLT+GS NP++W D+WT VTED SLSAQFEHTILIT+
Sbjct: 282 VVLHFRNNEAGRMVLNQTFTIEPMLTIGSRNPIMWDDNWTVVTEDASLSAQFEHTILITK 341
Query: 362 DGAEILTQC 370
DGAEILT+C
Sbjct: 342 DGAEILTKC 350
>AT1G13270.1 | chr1:4544999-4547155 FORWARD LENGTH=370
Length = 369
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/303 (57%), Positives = 219/303 (72%), Gaps = 24/303 (7%)
Query: 68 LRPGKVSPRLSVPKHIQRPPYVNARQRPGLHNGPEIHDERGIECMRASGKLAAQVLKFAG 127
LR G+VSPRL VP HI RPPYV + P + + +I GI MRA+ +LAA+VL +AG
Sbjct: 91 LRRGRVSPRLLVPDHIPRPPYVESGVLPDISSEFQIPGPEGIAKMRAACELAARVLNYAG 150
Query: 128 TLVEPGITTDEIDKAVHQMIVDNGAYPSPLGYCGFPKSVCTSVNECICHGIPDSRPLEDG 187
TLV+P +TT+EIDKAVH MI++ GAYPSPLGY GFPKSVCTSVNEC+CHGIPDSR L+ G
Sbjct: 151 TLVKPSVTTNEIDKAVHDMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQSG 210
Query: 188 DIINIDVTVYLNRVFLCISSLYLHKCQSMTMVAGQLGYHGDTSATFLCGNVDDKAKKLVQ 247
DIINIDVTVYL+ GYHGDTS TF CG VD+ K+LV+
Sbjct: 211 DIINIDVTVYLD------------------------GYHGDTSRTFFCGEVDEGFKRLVK 246
Query: 248 VTRECLDKAISICAPGVEIKRIGRTIQDHADKFKFGVVRQFVGHGVGQVFHAEPVVLHFR 307
VT ECL++ I++C G K+IG+ I +HA+KF + VV +FVGHGVG VFH+EP++ H+R
Sbjct: 247 VTEECLERGIAVCKDGASFKKIGKRISEHAEKFGYNVVERFVGHGVGPVFHSEPLIYHYR 306
Query: 308 NNEWGRMTLNQTFTIEPMLTVGSVNPVIWSDDWTAVTEDGSLSAQFEHTILITEDGAEIL 367
N+E G M QTFTIEP+LT+G+ V W D+WT +T DG ++AQFEHTILIT G+EIL
Sbjct: 307 NDEPGLMVEGQTFTIEPILTIGTTECVTWPDNWTTLTADGGVAAQFEHTILITRTGSEIL 366
Query: 368 TQC 370
T+C
Sbjct: 367 TKC 369
>AT3G25740.1 | chr3:9397806-9399653 FORWARD LENGTH=345
Length = 344
Score = 327 bits (839), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 165/300 (55%), Positives = 207/300 (69%), Gaps = 27/300 (9%)
Query: 71 GKVSPRLSVPKHIQRPPYVNARQRPGLHNGPEIHDERGIECMRASGKLAAQVLKFAGTLV 130
G VSPRLSVP HI +P YV + + P + + +I D GI M+ + +LAA+VL +AGTLV
Sbjct: 67 GTVSPRLSVPDHILKPLYVESSKVPEISSELQIPDSIGIVKMKKACELAARVLDYAGTLV 126
Query: 131 EPGITTDEIDKAVHQMIVDNGAYPSPLGYCGFPKSVCTSVNECICHGIPDSRPLEDGDII 190
P +TTDEIDKAVHQM+++ GAYPSPLGY GFPKSVCTSVNEC+ HGIPDSRPL++GDII
Sbjct: 127 RPFVTTDEIDKAVHQMVIEFGAYPSPLGYGGFPKSVCTSVNECMFHGIPDSRPLQNGDII 186
Query: 191 NIDVTVYLNRVFLCISSLYLHKCQSMTMVAGQLGYHGDTSATFLCGNVDDKAKKLVQVTR 250
NIDV VYL+ GYHGDTS TFLCG+V+ K+LV+VT
Sbjct: 187 NIDVAVYLD------------------------GYHGDTSKTFLCGDVNGSLKQLVKVTE 222
Query: 251 ECLDKAISICAPGVEIKRIGRTIQDHADKFKFGVVRQFVGHGVGQVFHAEPVVLHFRNNE 310
ECL+K IS+C G K+IG+ I +HA K+ + + R F+GHGVG V H+EP++ N +
Sbjct: 223 ECLEKGISVCKDGASFKQIGKIISEHAAKYGYNMER-FIGHGVGTVLHSEPLIYLHSNYD 281
Query: 311 W--GRMTLNQTFTIEPMLTVGSVNPVIWSDDWTAVTEDGSLSAQFEHTILITEDGAEILT 368
+ M QTFT+EP+LT+G+ V W D WT VT DG +AQFEHTILIT GAEILT
Sbjct: 282 YELEYMIEGQTFTLEPILTIGTTEFVTWPDKWTIVTADGGPAAQFEHTILITTTGAEILT 341
>AT2G45240.1 | chr2:18656059-18658906 FORWARD LENGTH=399
Length = 398
Score = 260 bits (665), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 183/325 (56%), Gaps = 34/325 (10%)
Query: 54 NRGQSDKPE----DNPRRLRPGKVSPRLSVPKHIQRPPYV-----NARQRPGLHNGPEIH 104
+GQ+ P+ D L+ +S + VP I++P + L + EI
Sbjct: 83 KKGQARTPKLPHFDWTGPLKQYPISTKRVVPAEIEKPDWAIDGTPKVEPNSDLQHVVEIK 142
Query: 105 DERGIECMRASGKLAAQVLKFAGTLVEPGITTDEIDKAVHQMIVDNGAYPSPLGYCGFPK 164
I+ MR + K+A +VL A ++ PG+TTDEID+ VH+ + G YPSPL Y FPK
Sbjct: 143 TPEQIQRMRETCKIAREVLDAAARVIHPGVTTDEIDRVVHEATIAAGGYPSPLNYYFFPK 202
Query: 165 SVCTSVNECICHGIPDSRPLEDGDIINIDVTVYLNRVFLCISSLYLHKCQSMTMVAGQLG 224
S CTSVNE ICHGIPD+R LEDGDI+N+DVTV G
Sbjct: 203 SCCTSVNEVICHGIPDARKLEDGDIVNVDVTVCYK------------------------G 238
Query: 225 YHGDTSATFLCGNVDDKAKKLVQVTRECLDKAISICAPGVEIKRIGRTIQDHADKFKFGV 284
HGD + T+ GNVD+ +++LV+ T ECL+KAI+I PGV + IG + HA V
Sbjct: 239 CHGDLNETYFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRFREIGEIVNRHATMSGLSV 298
Query: 285 VRQFVGHGVGQVFHAEPVVLHF-RNNEWGRMTLNQTFTIEPMLTVGSVNPVIWSDDWTAV 343
VR + GHG+G +FH P + H+ RN G M QTFTIEPM+ G W D WTAV
Sbjct: 299 VRSYCGHGIGDLFHCAPNIPHYARNKAVGVMKAGQTFTIEPMINAGGWRDRTWPDGWTAV 358
Query: 344 TEDGSLSAQFEHTILITEDGAEILT 368
T DG SAQFEHT+L+TE G E+LT
Sbjct: 359 TADGKRSAQFEHTLLVTETGVEVLT 383
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,060,318
Number of extensions: 339428
Number of successful extensions: 641
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 4
Length of query: 370
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,364,969
Effective search space: 2258541630
Effective search space used: 2258541630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)