BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0761600 Os02g0761600|AK120494
         (330 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33380.1  | chr4:16072064-16074605 FORWARD LENGTH=329          271   3e-73

>AT4G33380.1 | chr4:16072064-16074605 FORWARD LENGTH=329
          Length = 328

 Score =  271 bits (694), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 149/332 (44%), Positives = 185/332 (55%), Gaps = 6/332 (1%)

Query: 1   MARGVARAASFGGRAATARWCSYRRITVAVCLGNLVAALLVLRSL-TSLAPTPPKREEVV 59
           MARG      + G  A     S++RIT+ VC  N++ AL VLR L  S        + VV
Sbjct: 1   MARG---GGEWTGGIAGTGVLSFKRITLLVCFFNILIALFVLRFLYASSLHIYSNNDNVV 57

Query: 60  EYTEEQXXXXXXXXXXXXXXXPVELVEAVKNXXXXXXXXXXXXXXXXXXXXQKVSYEIVQ 119
           +YT ++               P  +++ VK                     + V  EI+Q
Sbjct: 58  KYTADEIRKMEESIRIRRSKEPTLILQLVKKLKHEVSTAESSTELSPNVKHKLVD-EILQ 116

Query: 120 LLLDLGDNSSFAQQREAVESWRFEKLKDIKS-ASIQNSTKLDLSNEEARTLKRALQFNWH 178
            L    D S+  Q RE VE+WR EKL++ K     QN     L  EEA  L RAL+  W 
Sbjct: 117 RLKSFEDKSNVTQLREVVETWRNEKLEEAKELIQGQNGVNSTLIVEEAGMLVRALELEWD 176

Query: 179 VLLEDIGLWIPSEVSHTEHDDKXXXXXXXXXXXXXXXXXSQCNAELHTDYDGAAVRWGLT 238
           VL E+IG W+P+EV++ EHDDK                 + CNAELHTDY GAAVRWGLT
Sbjct: 177 VLSEEIGFWLPAEVTNVEHDDKPEGEEEPEEILAGRPVPAVCNAELHTDYGGAAVRWGLT 236

Query: 239 HPKESXXXXXXXXXXXXKNARPGELRCNIWVYCPSEFGCFSPDKYEHKHQECWLKQADHP 298
           H KES            K A+PGE RCNIWVYCPSEFGCFSPD YEHKHQECWLK A+ P
Sbjct: 237 HHKESAADCCQACLDQAKRAKPGETRCNIWVYCPSEFGCFSPDIYEHKHQECWLKYAEKP 296

Query: 299 KLNFKDKYSESYRDSHPTAPVVVPWMSGVISA 330
           K NFKD+YSE+YR++HP AP +VPW+SGV++A
Sbjct: 297 KQNFKDRYSETYRNNHPKAPSIVPWVSGVVTA 328



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,885,525
Number of extensions: 200591
Number of successful extensions: 449
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)