BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0761200 Os02g0761200|AK073828
         (463 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33945.1  | chr4:16268119-16270514 FORWARD LENGTH=465          422   e-118

>AT4G33945.1 | chr4:16268119-16270514 FORWARD LENGTH=465
          Length = 464

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/460 (50%), Positives = 304/460 (66%), Gaps = 4/460 (0%)

Query: 5   ISQEAFDAMVRENMEDLGMXXXXXXXXXXXXXXXQGADLSGIIKRVPGEAAAAEVSPVMR 64
           ISQEAFD +VREN+EDLGM               QG DL GII  VPGE++  + +PV+ 
Sbjct: 6   ISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKD-NPVIA 64

Query: 65  VLDEVKXXXXXXXXXXXXXXXXXXRLASLLDELRELCSGDGLENAAVAARNGGVEALVAL 124
            LD +K                   ++SL   L ELCS     NAA+A ++G V+   ++
Sbjct: 65  CLDRLKEFDSVSIDGPLRDEVFD-EISSLFKNLNELCSSQESGNAAIATKHGAVDLTCSI 123

Query: 125 CASAGV--KQERXXXXXXXXXXXXXRDVGSTEKFRQSEGPQVVMGILKGGSESSDILEGG 182
           C+   +  +  R             RD+ STE+FR   GP +V+ +L   S  SD+L+ G
Sbjct: 124 CSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLDAG 183

Query: 183 FRVVASASAGNEVVKECFMVLKVDELIFQVMGEKSNSNVQSLYDAIRVLLTPDDNRVVAS 242
           F VVA+A+ GNEVVK+ FM LK+DELI QV+  +S + +++LYDAI  LLTPDD RVVAS
Sbjct: 184 FAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVVAS 243

Query: 243 QVYGYSRRFAETGIAAVLVNALREKVXXXXXXXXXXXXXXIAVNDEICRSISENGGIDVL 302
           QVYGY+R FA+ GIA  L  AL+  +              IAVNDEIC+SI+E+GGID L
Sbjct: 244 QVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGIDTL 303

Query: 303 LRCIDEASEQKNKVIAKSCCSLLSKLAGSDANKTTIIERGGFDKFLKLTSRFSEDPPIIQ 362
           LRCID++ EQ NK  AK+CCSLLSKLAGSD+NK+TI+E+ G DK + L  RFS+DP +IQ
Sbjct: 304 LRCIDDSGEQGNKTAAKTCCSLLSKLAGSDSNKSTIVEKQGLDKLITLALRFSDDPLVIQ 363

Query: 363 EVMSMVTILTLRSPENAARAMGAGYGTLAIQAMQKFPSSAQTQKQACLMIRNLVVRNPEN 422
           EVM +++I+ LRSP++AA+A+ AG G LA+QAM++FP +AQ Q+ AC MIRN+ VR+ EN
Sbjct: 364 EVMLIISIICLRSPDHAAKAIEAGAGDLAVQAMKRFPVAAQMQRNACNMIRNIAVRSAEN 423

Query: 423 RTILLNDGVEKLIRKTKMMHGSCKDAATSALRDLGVDNYN 462
           RTILL +G+EKLIR  K  + +C+ AAT ALRDLG+DNYN
Sbjct: 424 RTILLANGIEKLIRTAKANNETCRAAATDALRDLGLDNYN 463



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,655,964
Number of extensions: 260442
Number of successful extensions: 762
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,310,137
Effective search space: 2999959457
Effective search space used: 2999959457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)