BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0759800 Os02g0759800|AK067153
(607 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G77180.1 | chr1:28999791-29001632 REVERSE LENGTH=614 402 e-112
>AT1G77180.1 | chr1:28999791-29001632 REVERSE LENGTH=614
Length = 613
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/353 (58%), Positives = 237/353 (67%), Gaps = 12/353 (3%)
Query: 1 MASLKELLPTPKAAASTFYDHSSDPWFKERYGGEXXXXXXXXXXXXXXXXXXXXXXYGKR 60
M SL +L P PK+ +T+YDHS+D WFK R Y R
Sbjct: 1 MKSLNDL-PAPKSTTTTYYDHSNDAWFKNRV-------TESETVKSSSIKFKVVPAYLNR 52
Query: 61 GGFVPRRPEDFGDGGAFPEIHVAQYPLGMGR-RDEKGGSKILALTVDAKGSVAFDAVVKQ 119
G P+ PEDFGDGGAFPEIH+ QYPL MG+ + K G+K L +TVDA+G+V FDA+V+Q
Sbjct: 53 QGLRPKNPEDFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQ 112
Query: 120 GENASKIVYSKHSDLVPKIXXXXX---XXXXXXXXYQKQIEETTERTKAALEKVVNVRLS 176
EN+ KIVYS+H D++PK QK+I+ET E TKAA+EK+VNVRLS
Sbjct: 113 NENSRKIVYSQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLS 172
Query: 177 AAQPKNVPTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAQDPLEPPKFKHKRVPRA 236
AAQP N+ +S++IKYKPSQQS+AFNSGAKERIIRM EM DPL+PPKFKHKRVPRA
Sbjct: 173 AAQPSNIARQSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRA 232
Query: 237 XXXXXXXXXXXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQIN 296
TVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQ+VQIN
Sbjct: 233 SGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQIN 292
Query: 297 DNFAKLSEALYVAEQKAREAVQMRSKVXXXXXXXXXXXXXXXXXALAQKARME 349
DNFAKLSEALYVAEQKAREAV MRSKV ALAQKAR E
Sbjct: 293 DNFAKLSEALYVAEQKAREAVSMRSKVQKEMVMKDKERKEQELRALAQKARSE 345
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 156/188 (82%), Gaps = 2/188 (1%)
Query: 420 AAMGKKSKLTRDRDRDVSEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYN 479
AAMGKKSK+TRDRDRD+SEK+ALGMASTGG GGEVMYDQRLFNQDKGMDSGFA DDQYN
Sbjct: 422 AAMGKKSKITRDRDRDISEKVALGMASTGGKGGGEVMYDQRLFNQDKGMDSGFAADDQYN 481
Query: 480 IYSKGLFTAQPTLSTLYRPKKDGDSDVYGDADEQLEKVMKTDRFKPDKGFSGASERSG-K 538
+Y KGLFTAQPTLSTLY+PKKD D ++YG+ADEQL+K+ T+RFKPDK F+GASER G K
Sbjct: 482 LYDKGLFTAQPTLSTLYKPKKDNDEEMYGNADEQLDKIKNTERFKPDKAFTGASERVGSK 541
Query: 539 RDRPVEFDKQEENDPFGLDQFLTEVKKGKKAVEKIXXXXXXXXXXXXXXXD-DYEGGGSG 597
RDRPVEF+K+EE DPFGL+++++++KKGKK ++KI D + GGSG
Sbjct: 542 RDRPVEFEKEEEQDPFGLEKWVSDLKKGKKPLDKIGSGGTMRASGGGGSSSRDDDHGGSG 601
Query: 598 RSRINFER 605
R++INFER
Sbjct: 602 RTKINFER 609
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,317,248
Number of extensions: 391760
Number of successful extensions: 749
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 2
Length of query: 607
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 503
Effective length of database: 8,255,305
Effective search space: 4152418415
Effective search space used: 4152418415
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)