BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0756100 Os02g0756100|AK060615
(110 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10310.1 | chr5:3241666-3242127 REVERSE LENGTH=123 91 9e-20
AT3G13898.1 | chr3:4584011-4584334 FORWARD LENGTH=108 52 4e-08
AT4G14723.1 | chr4:8440167-8440693 FORWARD LENGTH=110 52 4e-08
AT2G30370.1 | chr2:12940577-12942167 REVERSE LENGTH=231 50 3e-07
AT3G22820.1 | chr3:8073451-8074061 REVERSE LENGTH=108 48 9e-07
>AT5G10310.1 | chr5:3241666-3242127 REVERSE LENGTH=123
Length = 122
Score = 91.3 bits (225), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 54/92 (58%), Gaps = 17/92 (18%)
Query: 32 LSSSQSLAEDKSRLGSTPPSCHNRCNACNPCTPVQVAALP-------------GVSRPAS 78
+S +L EDK+RLGSTPPSCHNRCN C+PC +QV LP G RP S
Sbjct: 35 ISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPS 94
Query: 79 AADRVDVAGFAQYSNYKPLGWKCRCAGRLFDP 110
+ V QYSNYKP+GWKC C G ++P
Sbjct: 95 SLTTV----LDQYSNYKPMGWKCHCNGHFYNP 122
>AT3G13898.1 | chr3:4584011-4584334 FORWARD LENGTH=108
Length = 107
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 17/74 (22%)
Query: 33 SSSQSLAEDKSRLGSTPPSCHNRCNACNPCTPVQ---VAALPGVSRPASAADRVDVAGFA 89
+ + + + + R+GS PPSC +C C PC +Q ++++P +S
Sbjct: 45 ENKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISSIPHLS--------------P 90
Query: 90 QYSNYKPLGWKCRC 103
Y+NY+P GW+C C
Sbjct: 91 HYANYQPEGWRCHC 104
>AT4G14723.1 | chr4:8440167-8440693 FORWARD LENGTH=110
Length = 109
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 46 GSTPPSCHNRCNACNPCTPVQVAALPGVSRPASAADRVDVAGFAQYSNYKPLGWKCRCAG 105
GS+PP+C ++C C PC PV V PG+S P Y P W+C+C
Sbjct: 60 GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPL---------------EYYPEAWRCKCGN 104
Query: 106 RLFDP 110
+LF P
Sbjct: 105 KLFMP 109
>AT2G30370.1 | chr2:12940577-12942167 REVERSE LENGTH=231
Length = 230
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 30/120 (25%)
Query: 1 MAVRSPHRAFLVAMILVSFLLGAAAGIRSTTLSSSQSLAEDKSR----------LGSTPP 50
+ VRSP LV L L G + + ++ + D+S+ LGS+PP
Sbjct: 131 LLVRSP----LVGPCLAYDLDRVEEGKSTVVIKKTRKIG-DRSKEAELRRILRGLGSSPP 185
Query: 51 SCHNRCNACNPCTPVQVAALPGVSRPASAADRVDVAGFAQYSNYKPLGWKCRCAGRLFDP 110
C ++C C PC PV V PG P +A Y P W+C+C +L+ P
Sbjct: 186 RCSSKCGRCTPCKPVHVPVPPGT--PVTA-------------EYYPEAWRCKCGNKLYMP 230
>AT3G22820.1 | chr3:8073451-8074061 REVERSE LENGTH=108
Length = 107
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 22 GAAAGIRSTTLSSSQSLAEDKSRLG---STPPSCHNRCNACNPCTPVQVAALPGVSRPAS 78
G G + S D+ RLG S PP C +C C PC V V PG+ P
Sbjct: 31 GLGQGKKEIARSGLPGQIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPL- 89
Query: 79 AADRVDVAGFAQYSNYKPLGWKCRCAGRLFDP 110
Y P W+C+C +LF P
Sbjct: 90 --------------EYYPEAWRCKCGNKLFMP 107
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,172,400
Number of extensions: 68907
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 6
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)