BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0754000 Os02g0754000|AK060979
         (364 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39870.1  | chr4:18502234-18504275 FORWARD LENGTH=395          284   6e-77
AT2G05590.2  | chr2:2067196-2068951 FORWARD LENGTH=304            201   5e-52
AT5G06260.1  | chr5:1902755-1904835 REVERSE LENGTH=425             73   2e-13

>AT4G39870.1 | chr4:18502234-18504275 FORWARD LENGTH=395
          Length = 394

 Score =  284 bits (726), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 160/194 (82%), Gaps = 1/194 (0%)

Query: 171 LPAMSEPSVLLSEVMRFNIYASFPVLAKGMNWVLLYSTWRHGISLSTLYRRSMLCPGYSL 230
           +P +SEPS+LLSE  R ++Y S P L +G  W+LLYSTWRHGISLSTLYR+S+L PG SL
Sbjct: 201 IPEISEPSLLLSEQSRRSLYTSLPALVQGRKWILLYSTWRHGISLSTLYRKSLLWPGLSL 260

Query: 231 LVVGDKEGAVFGGLVEAPLQPTSAKKYQGSNSCFVFTNLHSNPSIYRPTGANNYFTVCST 290
           LVVGD++G+VFGGLVEAPL PT  KKYQG+NS FVFTN    P+IYRPTGAN ++T+CS 
Sbjct: 261 LVVGDRKGSVFGGLVEAPLIPTD-KKYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSK 319

Query: 291 DYLALGGGGHFALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVELWGFVYPSKYDET 350
           ++LALGGGG FALYLD++LLSGSS+ SET+ N CL+ S DF VK+VELWGFVY SKYDE 
Sbjct: 320 EFLALGGGGRFALYLDSELLSGSSAYSETYGNSCLADSQDFDVKEVELWGFVYGSKYDEI 379

Query: 351 LALCRTEKPGICRW 364
           LA  +T +PG+CRW
Sbjct: 380 LAHSKTMEPGLCRW 393



>AT2G05590.2 | chr2:2067196-2068951 FORWARD LENGTH=304
          Length = 303

 Score =  201 bits (511), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 125/174 (71%)

Query: 174 MSEPSVLLSEVMRFNIYASFPVLAKGMNWVLLYSTWRHGISLSTLYRRSMLCPGYSLLVV 233
           ++E SV ++  +   ++AS P + +G  W+LLYST +HGISL TL RRS   PG  LLV 
Sbjct: 128 LTESSVFITANLFEFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPCLLVA 187

Query: 234 GDKEGAVFGGLVEAPLQPTSAKKYQGSNSCFVFTNLHSNPSIYRPTGANNYFTVCSTDYL 293
           GDK+GAVFG L+E PLQPT  +KYQG++  F+FT ++  P I+RPTGAN Y+ +C  ++L
Sbjct: 188 GDKQGAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNEFL 247

Query: 294 ALGGGGHFALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVELWGFVYPSKY 347
           A GGGG+FAL LD DLL  +S  SETF N CL+ S +F +K+VELWGF + S+Y
Sbjct: 248 AFGGGGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVELWGFAHASQY 301



>AT5G06260.1 | chr5:1902755-1904835 REVERSE LENGTH=425
          Length = 424

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 173 AMSEPSVLLSEVMRFNIYASFPVLAKGMNWVLLYSTWRHGISLST-LYRRSMLCPGYSLL 231
           ++S   +LL +   ++I  + P   + + W LLY +  HG S +T L   S      S+L
Sbjct: 210 SVSSDRLLLKKEYAWHIGGALP-HHELVEWKLLYHSSVHGQSFNTFLGHTSNTGMSASVL 268

Query: 232 VVGDKEGAVFGGLVEAPLQPTSAKKYQGSNSCFVFTNLHSNPSIYRPTGANNYFTVCSTD 291
           ++ D EG V+GG    P +  S   + G    F+F  L+   +IYRPTGAN     C+T+
Sbjct: 269 IIKDTEGYVYGGYASQPWERYS--DFYGDMKSFLF-QLNPKAAIYRPTGANTNIQWCATN 325

Query: 292 YLA------LGGGG---HFALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVELWGFV 342
           + +      +G GG   HF L++ A    G +    TF +  LS +     + +E WG V
Sbjct: 326 FTSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIV 385

Query: 343 YPSKYDET 350
             S   +T
Sbjct: 386 QASNEQDT 393



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,082,303
Number of extensions: 271736
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 3
Length of query: 364
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,364,969
Effective search space: 2208351816
Effective search space used: 2208351816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)