BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0753300 Os02g0753300|AK065736
(193 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182 180 5e-46
AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184 174 2e-44
AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105 133 5e-32
>AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182
Length = 181
Score = 180 bits (456), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 99/131 (75%)
Query: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
+CVYT Y+RTGSIWKAGTD+ I+ + DG+ +GI +L +W GLMG ++YFERGNLDI
Sbjct: 28 DCVYTFYLRTGSIWKAGTDSIISARIYDKDGDYIGIKNLQAWAGLMGPDYNYFERGNLDI 87
Query: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAA 172
FSGR PC+ +P C + + SDG+G HHGWY NYVE+T G H C+ Q F +EQWLATD +
Sbjct: 88 FSGRAPCLPSPICALNLTSDGSGDHHGWYVNYVEITTAGVHAQCSTQDFEIEQWLATDTS 147
Query: 173 PYKLEAIRDKC 183
PY+L A+R+ C
Sbjct: 148 PYELTAVRNNC 158
>AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184
Length = 183
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 108/159 (67%), Gaps = 2/159 (1%)
Query: 25 RRDLLPTRIKLVRXXXXXXXXXXXXXKMECVYTVYIRTGSIWKAGTDANITLELAGADGN 84
RRD+L + LV + +CVYT ++RTGS +KAGTD+ I+ + G+
Sbjct: 4 RRDVLFLSLLLV--IATVSAVALADDEADCVYTFFLRTGSTFKAGTDSIISARVYDKYGD 61
Query: 85 GVGITDLPSWGGLMGEGHSYFERGNLDIFSGRGPCMAAPPCWMRVASDGTGPHHGWYCNY 144
+GI +L +WGGLMG G++Y+ERGNLDIFSG+ PC+ +P C + + SDG+G HHGWY NY
Sbjct: 62 YIGIRNLEAWGGLMGPGYNYYERGNLDIFSGKAPCLPSPVCSLNLTSDGSGDHHGWYVNY 121
Query: 145 VEVTVTGAHKGCAQQLFTVEQWLATDAAPYKLEAIRDKC 183
VEVT G H C+ Q F VEQWLA+D +PY+L A+R+ C
Sbjct: 122 VEVTTAGVHAKCSYQSFDVEQWLASDTSPYELSAVRNNC 160
>AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105
Length = 104
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 74 ITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDIFSGRGPCMAAPPCWMRVASDG 133
++L L + G I+DL SWGGLMG H YFERGNLDIFSG G C++ P C M + SDG
Sbjct: 1 MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60
Query: 134 TGPHHGWYCNYVEVTVTGA-HKGCAQQLFTVEQWLATDAAPYKL 176
+G HHGWYCNYVEVT++ + + C+Q+ F VEQWLA DA+PY+L
Sbjct: 61 SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYEL 104
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,583,746
Number of extensions: 141030
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 3
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)