BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0751300 Os02g0751300|J033055P08
(147 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 63 5e-11
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 63 7e-11
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 57 4e-09
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 56 5e-09
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 56 8e-09
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 56 8e-09
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 55 9e-09
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 55 1e-08
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 55 2e-08
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 54 4e-08
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 52 1e-07
AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223 49 1e-06
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 47 5e-06
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 70 FLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKERNCSLTSIKDTPAV 127
FL++CALC R L PG+D Y+YRG+ AFCS ECR+ + ERKE+ S K+ PAV
Sbjct: 89 FLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDERKEKGKSAAPAKE-PAV 145
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 68 AAFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKERN 115
++FL NC C R L PG+D Y+Y+G+ AFCS ECRE +E+ E K RN
Sbjct: 71 SSFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDEGKTRN 118
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 70 FLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKER 114
FL++C+LC R L G+D Y+YRG+ AFCS ECR+ I ERKE+
Sbjct: 78 FLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKEK 122
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 65 VETAAFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKERNCSLT 119
++ FL +C LC + LG +D Y+YRG+ FCS+ECR+ IE E KE+ +L+
Sbjct: 92 IQQPHFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEKKQNLS 146
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 65 VETAAFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKE 113
+ FLK C LC + L KD Y+YRG++ FCS+ECRE + +RKE
Sbjct: 37 ISELCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 65 VETAAFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKE 113
+ FLK C LC + L KD Y+YRG++ FCS+ECRE + +RKE
Sbjct: 37 ISELCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 70 FLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKERNCSL-TSIK 122
FL +C LC + LG +D ++YRG+ FCS+ECRE IE E KE+ SL TS+K
Sbjct: 76 FLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKEKKQSLSTSVK 129
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 66 ETAAFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKER 114
E FL++C+LC + LG D ++YRG+ AFCS ECRE IE E KER
Sbjct: 12 EEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKER 60
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 70 FLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKERNCSLTSIK 122
FLK C+LC R L +D Y+YRG AFCS ECRE I+ E+K + +TS K
Sbjct: 57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEKKAKTGFVTSKK 109
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 66 ETAAFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECR--ECVIEYYERKERN-CSLTSIK 122
+ + FL++C LC R L P KD Y+Y+G+ AFCS ECR + +++ E R CSL +K
Sbjct: 64 QDSGFLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEESLRREYCSLMDVK 123
Query: 123 ----DTPA 126
D+PA
Sbjct: 124 KKKFDSPA 131
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 69 AFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKER 114
FL +C LC + L G+D +IYRGE AFCS ECR I ERKER
Sbjct: 181 GFLNSCYLCRKKLH-GQDIFIYRGEKAFCSTECRSSHIANDERKER 225
>AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223
Length = 222
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 70 FLKNCALCGRDLGPGKDTYIYRGEVAFCSKECRECVIEYYERKER 114
FL +C LC + L GKD Y+Y+GE+ FCS ECR I ER+E+
Sbjct: 150 FLSSCCLCKKKLQ-GKDIYMYKGEMGFCSAECRSVQIMNDERQEQ 193
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 67 TAAFLKNCALCGRDLGPGKDTYIYRGEVAFCSKECR 102
T +FL C C ++L +D YIYRGE FCS ECR
Sbjct: 217 TESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECR 252
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,143,120
Number of extensions: 61279
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 14
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)