BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0750600 Os02g0750600|AK066145
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22050.1 | chr1:7771897-7772843 FORWARD LENGTH=120 168 5e-43
AT1G77870.1 | chr1:29285177-29285714 FORWARD LENGTH=121 139 4e-34
AT4G24990.1 | chr4:12849973-12851249 REVERSE LENGTH=119 128 6e-31
AT3G26980.1 | chr3:9946467-9947444 REVERSE LENGTH=121 128 7e-31
AT3G01050.1 | chr3:13854-14675 FORWARD LENGTH=118 121 1e-28
AT5G15460.1 | chr5:5018947-5020105 REVERSE LENGTH=125 117 2e-27
>AT1G22050.1 | chr1:7771897-7772843 FORWARD LENGTH=120
Length = 119
Score = 168 bits (426), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 100/119 (84%)
Query: 1 MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60
MAG ++ IE+KFRL DGTDIGPSKY+ S TVS+LKE ++++WP+DKE TPKTVND+KLIN
Sbjct: 1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60
Query: 61 AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
AG+ILENNRTLAESR+PV E+PG +ITMH+V+R P DK SEK + P +NRC CTIL
Sbjct: 61 AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119
>AT1G77870.1 | chr1:29285177-29285714 FORWARD LENGTH=121
Length = 120
Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 91/119 (76%), Gaps = 2/119 (1%)
Query: 3 GGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAG 62
G ++ IE+KFRL DGTDIGPSKY TV++LKE I+A+WP+DKE PK +N++KLIN G
Sbjct: 2 GDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGG 61
Query: 63 RILENNRTLAESR--VPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
+ILENN+TL+E+R + +GE+PG V TMHVV+RPP +K EK + P+++ C C IL
Sbjct: 62 KILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120
>AT4G24990.1 | chr4:12849973-12851249 REVERSE LENGTH=119
Length = 118
Score = 128 bits (322), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 85/115 (73%)
Query: 5 KEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRI 64
+E I++KFRL+DG+DIGP +Y ++TV LK+ +++ WP+ K + PK +N++KLI++G+I
Sbjct: 4 EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKI 63
Query: 65 LENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
LENN+T+ + + P G++ GGVI MHVVV+P +EK++ +PK C CTIL
Sbjct: 64 LENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118
>AT3G26980.1 | chr3:9946467-9947444 REVERSE LENGTH=121
Length = 120
Score = 128 bits (321), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 88/116 (75%), Gaps = 6/116 (5%)
Query: 8 IEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILEN 67
+E+KFRL+DG+D+GP +Y P+ TVS LKE I++ WP+DK+I PK+ +D+KLINAG+ILEN
Sbjct: 7 VELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILEN 66
Query: 68 NRTLAESRVPVGEVPGGVITMHVVVR----PPQPDKNSEKQLANSPKQNRCGCTIL 119
+T+A+ + P ++P VITMHVVV+ +P+K EK+ A P+++ C CTI+
Sbjct: 67 GKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEA--PQRSFCSCTIM 120
>AT3G01050.1 | chr3:13854-14675 FORWARD LENGTH=118
Length = 117
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 85/119 (71%), Gaps = 2/119 (1%)
Query: 1 MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60
MA +E+KFRL DG+DIGP + +TTVSALKE +++ WP++KE PKTV ++KLI+
Sbjct: 1 MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60
Query: 61 AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
AG++LEN++T+ + R PV + G V TMHV+++ P +K EK+ PK N+C C+++
Sbjct: 61 AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK--EKKPKGDPKMNKCVCSVM 117
>AT5G15460.1 | chr5:5018947-5020105 REVERSE LENGTH=125
Length = 124
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 1 MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60
MA K+ +E+KFRL DG+DIGP + +TTV+ LKE ++A+WP+DKE PKTV D+KLI+
Sbjct: 1 MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60
Query: 61 AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPP-QPDKNSEKQLANSPKQNRCGC 116
AGRILENN+T+ + R PVG G V TMHV+++ + +K+ KQN+C C
Sbjct: 61 AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVC 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,866,617
Number of extensions: 110176
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 6
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)