BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0750100 Os02g0750100|Os02g0750100
         (243 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09650.1  | chr4:6100799-6101503 FORWARD LENGTH=235            184   3e-47
AT5G13450.1  | chr5:4310558-4311941 REVERSE LENGTH=239             59   2e-09

>AT4G09650.1 | chr4:6100799-6101503 FORWARD LENGTH=235
          Length = 234

 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 124/179 (69%)

Query: 63  GYATALSEVASENGTLEATVSDXXXXXXXXXXXXXXXXXDNPTVPRDEKAQLIDEIAKSS 122
            YA AL++VA  N T+E TV+D                  NPT+  ++K Q+ID+I KSS
Sbjct: 54  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 113

Query: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTGTEVATVTSVVQLESQDLAQIAQ 182
            LQ+H  NFLNV+VD  R  ++T+IV+EFE  +N LT T++A V SVV+LE+  LAQIA+
Sbjct: 114 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 173

Query: 183 QVQNLTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQIEEITSEFEMPAVTL 241
           QVQ LTGAKNVRVKT ID  L+AGFTI+YG  GS LIDMSV+KQ+E+I S+ E+  + L
Sbjct: 174 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQL 232



>AT5G13450.1 | chr5:4310558-4311941 REVERSE LENGTH=239
          Length = 238

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 103 NPTVPRDEKAQLIDEIAKSSELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTGTE 162
           +P+VPR  +   I +    ++      NFL+++ +NG+   +  IV++F    N+  G  
Sbjct: 100 DPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDV 159

Query: 163 VATVTSVVQLESQDLAQIAQQVQNLTGA-KNVRVKTRIDPELIAGFTIQYGRDGSSLIDM 221
              VT+V+ L   +  ++ + +Q + GA K + V+ +IDP +  G  +++ +    ++DM
Sbjct: 160 KVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQ---KVLDM 216

Query: 222 SVR---KQIEEITSE 233
           S+R   +Q+E +  E
Sbjct: 217 SIRTRAQQMERLLRE 231



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.128    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,942,120
Number of extensions: 84133
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)