BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0745800 Os02g0745800|AK059598
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34550.1 | chr1:12647088-12652646 REVERSE LENGTH=736 145 3e-36
AT2G02910.1 | chr2:847335-849371 REVERSE LENGTH=461 145 5e-36
AT4G09630.1 | chr4:6083860-6087802 FORWARD LENGTH=712 140 1e-34
AT1G53040.1 | chr1:19764567-19766870 REVERSE LENGTH=541 91 2e-19
AT1G28240.1 | chr1:9868521-9871798 REVERSE LENGTH=582 85 7e-18
AT4G38500.1 | chr4:18008418-18010693 FORWARD LENGTH=500 80 2e-16
AT5G42660.1 | chr5:17103062-17105785 REVERSE LENGTH=464 77 2e-15
AT5G46220.1 | chr5:18738827-18741964 FORWARD LENGTH=463 49 4e-07
>AT1G34550.1 | chr1:12647088-12652646 REVERSE LENGTH=736
Length = 735
Score = 145 bits (367), Expect = 3e-36, Method: Composition-based stats.
Identities = 68/101 (67%), Positives = 78/101 (77%), Gaps = 8/101 (7%)
Query: 3 QYEYFFSIDLLHHNCAD--------VPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQL 54
Q++++ + L N +D VPEGSFIVRAHTPMSNLFSCLWFNEV RFT RDQL
Sbjct: 625 QFQFYKADGLTRFNASDPFKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQL 684
Query: 55 SFAYTYLKLRRMNTGKPFHLNMFKDCERRAITKLFHHRANE 95
SFAYTY KLRRMN KPF+L+MFKDCERR I KLF HR++E
Sbjct: 685 SFAYTYQKLRRMNPDKPFNLHMFKDCERRKIAKLFRHRSDE 725
>AT2G02910.1 | chr2:847335-849371 REVERSE LENGTH=461
Length = 460
Score = 145 bits (365), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 74/83 (89%)
Query: 20 VPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLRRMNTGKPFHLNMFKD 79
VPEGSFIVRAHTPMSNLF+CLWFNEV+RFTSRDQLSFAYTYLKL+R+N+ +P LNMFKD
Sbjct: 378 VPEGSFIVRAHTPMSNLFTCLWFNEVDRFTSRDQLSFAYTYLKLQRLNSDRPLRLNMFKD 437
Query: 80 CERRAITKLFHHRANETADPPPA 102
CERRA+TKLFHHR + + PP
Sbjct: 438 CERRALTKLFHHRVDSSPPSPPT 460
>AT4G09630.1 | chr4:6083860-6087802 FORWARD LENGTH=712
Length = 711
Score = 140 bits (353), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/101 (67%), Positives = 75/101 (74%), Gaps = 8/101 (7%)
Query: 3 QYEYFFSIDLLHHNCAD--------VPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQL 54
Q+E++ S L N +D VPEGSFIVR HTPMSNLFSCLWFNEV RFT RDQL
Sbjct: 600 QFEFYQSDGLTRFNASDPHKLLPSNVPEGSFIVREHTPMSNLFSCLWFNEVERFTPRDQL 659
Query: 55 SFAYTYLKLRRMNTGKPFHLNMFKDCERRAITKLFHHRANE 95
SFAYTY KL RMN PF+L+MFKDCERR ITKLF HR+ E
Sbjct: 660 SFAYTYQKLTRMNPDTPFNLHMFKDCERRKITKLFRHRSEE 700
>AT1G53040.1 | chr1:19764567-19766870 REVERSE LENGTH=541
Length = 540
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 18 ADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLRRMNTGKPFHLNMF 77
+DVPEG I+R H P++NLF+C+WFNEV+RFTSRDQLSFA K+R + +NMF
Sbjct: 412 SDVPEGCTIIREHIPITNLFTCVWFNEVDRFTSRDQLSFAIARDKIREKVD---WSINMF 468
Query: 78 KDCERRAITKLFHHR-ANETADPPPAN 103
DCERR K +HR T PP A+
Sbjct: 469 LDCERRNFVKQVYHRDVLLTMKPPRAS 495
>AT1G28240.1 | chr1:9868521-9871798 REVERSE LENGTH=582
Length = 581
Score = 85.1 bits (209), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 18 ADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLRRMNTGKPFHLNMF 77
+DVPEG I+R H P+SNLF+CLWFNEV+RFTSRDQ+SF+ K+ + ++MF
Sbjct: 438 SDVPEGCVILREHVPISNLFTCLWFNEVDRFTSRDQISFSTVRDKIAAKTN---WTVSMF 494
Query: 78 KDCERRAITKLFHHRANE 95
DCERR +HRA +
Sbjct: 495 LDCERRNFVVQRYHRAEQ 512
>AT4G38500.1 | chr4:18008418-18010693 FORWARD LENGTH=500
Length = 499
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 1 ITQYEYFFSIDLLHHNCADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTY 60
I +YE + + +DVPEG+ I+R HT M+NLFSCLWFNEV+ T RDQLSF Y
Sbjct: 358 IYRYEGLEPWSIKKNTVSDVPEGAVIIREHTAMNNLFSCLWFNEVHLLTPRDQLSFGYVV 417
Query: 61 LKLRRMNTGKPFHLNMFKDCERRAITKLFHH 91
+L+ F + MF++CE ++ +L H
Sbjct: 418 DRLK-----GAFKVFMFQNCEYNSLFELHPH 443
>AT5G42660.1 | chr5:17103062-17105785 REVERSE LENGTH=464
Length = 463
Score = 76.6 bits (187), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 22 EGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYTYLKLRRMNTGKPFHLNMFKDCE 81
E S IVR HTP++NLF CLWFNEV RFTSRDQLSF Y +L+ + ++NMF C
Sbjct: 389 EASVIVREHTPLTNLFMCLWFNEVVRFTSRDQLSFPYVLWRLKVLK-----NINMFPVCT 443
Query: 82 RRAITKLFHH 91
R+ + H
Sbjct: 444 RKDLVNSIGH 453
>AT5G46220.1 | chr5:18738827-18741964 FORWARD LENGTH=463
Length = 462
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 18 ADVPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQLSFAYT 59
DVP+ + I+R H SNLFSC FNE+ F RDQL+FA+
Sbjct: 341 TDVPDTALILRRHGIRSNLFSCFMFNELEAFNPRDQLAFAFV 382
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,444,910
Number of extensions: 87008
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 8
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)