BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0741900 Os02g0741900|AK068461
         (205 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24050.1  | chr1:8507057-8508439 FORWARD LENGTH=189            161   2e-40
AT1G70220.1  | chr1:26446330-26448009 REVERSE LENGTH=225           84   4e-17

>AT1G24050.1 | chr1:8507057-8508439 FORWARD LENGTH=189
          Length = 188

 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 32  FAIGVLISVKTTLGEEFEGQIVSFDRPTNLLVIQXXXXXXXXXXXXXXXXLKANYIREFS 91
           FA+G + SVK   G+EF G ++++D   N +  +                + A++I   S
Sbjct: 19  FAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRM-VNASFITGLS 77

Query: 92  VVGKADDPLDPAGCVLDLAAIHAREEAALRQAEIEAERIGVGVTPEAQSIFDALSKTLPV 151
            +GK +DPLD     +DL  + A+E  A+RQAE +AER+GVGVT EAQSIFDALSKTLPV
Sbjct: 78  YLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDALSKTLPV 137

Query: 152 QWDKTDIVVMKEVRVCNPYLPENVSGGTSAANERVKKVLDFERKRLHV 199
           QW+ +DI+VMKEVRV +PYL + V GGT AAN RVKKVL+ ER+RL +
Sbjct: 138 QWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQL 185



>AT1G70220.1 | chr1:26446330-26448009 REVERSE LENGTH=225
          Length = 224

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 44/207 (21%)

Query: 32  FAIGVLISVKTTLGEEFEGQIVSFDRPTNL------------------------------ 61
           F +G + +VK T G++F G ++++D   N                               
Sbjct: 20  FEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCYFAFLISSSC 79

Query: 62  ---------LVIQXXXXXXXXXXXXXXXXLKANYIREFSVVGKADDPLDPAGCVLDLAAI 112
                    LVI                 +  NYI E   +G+  + L     +++L  +
Sbjct: 80  VCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AKNTLVNLDGL 138

Query: 113 HAREEAALRQAEIEAERIGVGVTPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVCNPYLP 172
             +E  A+   E    +IG GVT E Q IFDA+SKTLP++W   +++VM +V + +PY  
Sbjct: 139 IEKENHAISNVE----KIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGDVFIRSPYHS 194

Query: 173 ENVSGGTSAANERVKKVLDFERKRLHV 199
           + V GG    NERVK VL  ERK+L +
Sbjct: 195 DCVYGGPRMVNERVKHVLGQERKKLQL 221



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,692,998
Number of extensions: 119350
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)