BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0741700 Os02g0741700|AK069210
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174 94 4e-20
AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167 92 1e-19
AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160 90 6e-19
AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183 87 3e-18
AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162 83 7e-17
>AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174
Length = 173
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEER------Q 54
MGNCQA +AAA+V+QHP G+++R S +E+MR PGHY++L+ + + E+
Sbjct: 1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLI-IPLPEKNIPATTTT 59
Query: 55 DGDGGAXXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRKAQQQ 110
D P E L+LGHAYRLIT+ EV K ++A+K K +K Q +
Sbjct: 60 TDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSE 115
>AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167
Length = 166
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQD----- 55
MGNCQA AA +V+QHPGG ++R S S EVM PGHY++L+ EE ++
Sbjct: 1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSEEEEKNIPATE 60
Query: 56 --GDGGAXXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRKAQQQLEE 113
D P E L+LGHAYRLIT+ EV K ++ +K K +K Q +
Sbjct: 61 KGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLREKKSAKTKKHQIEKTT 120
Query: 114 SRQKLQSK 121
+ +K K
Sbjct: 121 TAKKFSDK 128
>AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160
Length = 159
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIA-LVTLRVAEERQDGDGG 59
MGNCQA + A VVIQHP G+ E+L SA+ VM+ NPGH ++ L++ G GG
Sbjct: 1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGG 60
Query: 60 AXXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRK 106
P +TL+LGH YRLITT EV K + A+K K++K
Sbjct: 61 P---LRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKK 104
>AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183
Length = 182
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 1 MGNCQAAEAAAVVIQHPG-GRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGG 59
MGNCQAAEAA V+I HP +VER+ WS +A+++M++NPGHY+A+V + + G
Sbjct: 1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKG--- 57
Query: 60 AXXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRK 106
P +TLL+GH YRL++ EV +K K+ K
Sbjct: 58 ----LPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGK 100
>AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162
Length = 161
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGGA 60
MGNCQAAEAA VIQ P G+ R + +A+EV++++PGH++AL+ GG+
Sbjct: 1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSSAVPH-----GGS 55
Query: 61 XXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRK 106
P + LLLGH YRLI++ EV K ++A+K K++K
Sbjct: 56 ---LRVTRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKSGKMKK 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,357,485
Number of extensions: 61602
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)