BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0731700 Os02g0731700|AK072346
(323 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25440.1 | chr1:8933939-8935284 REVERSE LENGTH=418 103 1e-22
AT1G68520.1 | chr1:25709331-25710749 REVERSE LENGTH=407 81 8e-16
AT1G73870.1 | chr1:27779214-27780522 FORWARD LENGTH=393 72 5e-13
AT5G14370.1 | chr5:4632147-4633651 REVERSE LENGTH=340 64 9e-11
AT5G57180.2 | chr5:23168393-23170763 FORWARD LENGTH=436 60 1e-09
AT1G07050.1 | chr1:2164327-2165133 REVERSE LENGTH=196 57 1e-08
AT1G49130.1 | chr1:18174741-18175936 REVERSE LENGTH=327 56 3e-08
AT4G25990.2 | chr4:13191937-13193543 REVERSE LENGTH=410 51 7e-07
>AT1G25440.1 | chr1:8933939-8935284 REVERSE LENGTH=418
Length = 417
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 138/310 (44%), Gaps = 46/310 (14%)
Query: 19 ELEGQLLYRVPVFDPSLAEFCXXXXXXXXXXXXXXCFKEDAADGAVEDAKYPAAAASSPV 78
ELE QL+ +VPV DP ++E F D + +E +P + +
Sbjct: 124 ELEEQLICQVPVLDPLVSE----------------QFLNDVVEPKIE---FPMIRSGLMI 164
Query: 79 QQLPDS----FVNFEPTDAELREFAADMEALLGQGLDDSNELQDSFYMETLGLITPPVEE 134
++ D+ F PTD EL EFAAD+E LLG+GLD +S+ ME LGL + +
Sbjct: 165 EEEEDNAESCLNGFFPTDMELEEFAADVETLLGRGLD-----TESYAMEELGLSNSEMFK 219
Query: 135 SGRVKMELDGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNC-----TSPDE-QKSSA 188
+ ++E + + + +DV+ ++ F+ TS +E K+
Sbjct: 220 IEKDEIEEEVEEIKAMSMDI----FDDDRKDVDGTVPFELSFDYESSHKTSEEEVMKNVE 275
Query: 189 SNG---AAADSQFFHRSLDLRLNYEAIIESWGNS--PWTDGRPPHGQLD-DFWPNDHHYS 242
S+G + L LRLNY+++I +WG PW+ G PP +D WP
Sbjct: 276 SSGECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPA-FSMV 334
Query: 243 XXXXXXXXXXXXXXXMMTVRPRMDGPGXXXXXXXXXXXXXXXLFSKKIRYEVRKLNAEKR 302
+ DG G LFSKKIRYEVRKLNAEKR
Sbjct: 335 ENGGESTHQKQYVGGCLPSSGFGDG-GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKR 393
Query: 303 PRMKGRFVKR 312
PRMKGRFVKR
Sbjct: 394 PRMKGRFVKR 403
>AT1G68520.1 | chr1:25709331-25710749 REVERSE LENGTH=407
Length = 406
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 127/314 (40%), Gaps = 39/314 (12%)
Query: 19 ELEGQLLYRVPVFDPSLAEFCXXXXXXXXXXXXXXCFKEDAADGAVEDAKYPAAAASSPV 78
E+E QL++ VPV + + E C ++D +D A S +
Sbjct: 117 EVEEQLIFEVPVMNSMVEEQCFNQSLEKQNEFPMMPLSFKSSDEEDDDN------AESCL 170
Query: 79 QQLPDSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDSFYMETLGLITPPVEESGRV 138
L PTD EL +F AD+E LLG G + + +++ E L + VEE G V
Sbjct: 171 NGLF-------PTDMELAQFTADVETLLGGGDREFHSIEELGLGEMLKIEKEEVEEEGVV 223
Query: 139 KMEL----DGGVASNSRVSLPSCRAHPKPEDVESA--------DVLDIDFNCTSPDEQKS 186
E+ +G S +S H D +V+++ N
Sbjct: 224 TREVHDQDEGDETSPFEISFDYEYTHKTTFDEGEEDEKEDVMKNVMEMGVN--------- 274
Query: 187 SASNGAAADSQFFHRSLDLRLNYEAIIESWGNS--PWTDGRPPHGQLDDFWPNDHHYSXX 244
S G + + ++L LRL+YE++I +WG PWT P LD H
Sbjct: 275 EMSGGIKEEKK--EKALMLRLDYESVISTWGGQGIPWTARVPSEIDLDMVCFPTHTMGES 332
Query: 245 XXXXXXXXXXXXXMMTVRPRMDGPGXXXXXXXXXXXXXXXLFSKKIRYEVRKLNAEKRPR 304
+ + DG G LFSKKIRYEVRKLNAEKRPR
Sbjct: 333 GAEAHHHNHFRGLGLHLGDAGDG-GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPR 391
Query: 305 MKGRFVKRPSAAAA 318
MKGRFVKR S A
Sbjct: 392 MKGRFVKRSSIGVA 405
>AT1G73870.1 | chr1:27779214-27780522 FORWARD LENGTH=393
Length = 392
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 95/238 (39%), Gaps = 38/238 (15%)
Query: 83 DSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDSFYMETLGLITPPVEESGRVKMEL 142
+ F+ F P D +L + D+E+LL + E L L + G +K E
Sbjct: 184 EGFMGFVPLDMDLEDLTMDVESLLEE--------------EQLCLGFKEPNDVGVIKEEN 229
Query: 143 DGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNCTSPDEQKSSASNGAAADSQFFHRS 202
G N + D++ D + + S S+ A++ + S
Sbjct: 230 KVGFEINCK-------------DLKRVKDEDEEEEEAKCENGGSKDSDREASNDKDRKTS 276
Query: 203 LDLRLNYEAIIESWGN--SPWTDGRPPHGQLDDFWPNDHHYSXXXXXXXXXXXXXXXMMT 260
L LRL+Y A+I +W N SPW G P L H +T
Sbjct: 277 LFLRLDYGAVISAWDNHGSPWKTGIKPECMLGGNTCLPHVVGGYEKLMSSDGS-----VT 331
Query: 261 VRPRMDGPGX----XXXXXXXXXXXXXXLFSKKIRYEVRKLNAEKRPRMKGRFVKRPS 314
+ DG G LFSKKIRYEVRKLNAE+RPR+KGRFVKR S
Sbjct: 332 RQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTS 389
>AT5G14370.1 | chr5:4632147-4633651 REVERSE LENGTH=340
Length = 339
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 202 SLDLRLNYEAIIESWGN--SPWTDGRPP------HGQLDDFWPNDHHYSXXXXXXXXXXX 253
SL L+L+YE I+E+W + + + DG PP H D F ND +
Sbjct: 228 SLALKLDYEQIMEAWSDKGTLYVDGEPPQTVPDLHASADGF--NDGGEAGNLWAVPE--- 282
Query: 254 XXXXMMTVRPRMDGPGXXXXXXXXXXXXXXXLFSKKIRYEVRKLNAEKRPRMKGRFVKR 312
M R+ LFSK+IRY+VRKLNAEKRPR+KGRFVKR
Sbjct: 283 -----METTERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
>AT5G57180.2 | chr5:23168393-23170763 FORWARD LENGTH=436
Length = 435
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 31/33 (93%)
Query: 285 LFSKKIRYEVRKLNAEKRPRMKGRFVKRPSAAA 317
LFSKKIRY+VRKLNA++RPRMKGRFV+RP+ +
Sbjct: 398 LFSKKIRYQVRKLNADQRPRMKGRFVRRPNEST 430
>AT1G07050.1 | chr1:2164327-2165133 REVERSE LENGTH=196
Length = 195
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 285 LFSKKIRYEVRKLNAEKRPRMKGRFVKRPS 314
LFSKKIRY+VRKLNA+KRPR KGRFVKR +
Sbjct: 166 LFSKKIRYQVRKLNADKRPRFKGRFVKRET 195
>AT1G49130.1 | chr1:18174741-18175936 REVERSE LENGTH=327
Length = 326
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 285 LFSKKIRYEVRKLNAEKRPRMKGRFVKRPSA 315
LF KKIRYEVRK+NA+KRPRMKGRFV+R A
Sbjct: 293 LFEKKIRYEVRKVNADKRPRMKGRFVRRSLA 323
>AT4G25990.2 | chr4:13191937-13193543 REVERSE LENGTH=410
Length = 409
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 15/46 (32%)
Query: 285 LFSKKIRYEVRKLNAEKRPRMK---------------GRFVKRPSA 315
LFSKKIRY+VRKLNA++RPRMK GRFV+RP+A
Sbjct: 356 LFSKKIRYQVRKLNADQRPRMKVKDWHCNIVVVSHQQGRFVRRPNA 401
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,439,811
Number of extensions: 248302
Number of successful extensions: 477
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 10
Length of query: 323
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,392,385
Effective search space: 1879894240
Effective search space used: 1879894240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)