BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0731600 Os02g0731600|AK058271
(108 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01150.1 | chr4:493692-494668 FORWARD LENGTH=165 157 1e-39
AT4G38100.1 | chr4:17887033-17888177 REVERSE LENGTH=194 90 2e-19
AT2G46820.1 | chr2:19243729-19244870 FORWARD LENGTH=175 74 1e-14
AT1G52220.1 | chr1:19453770-19454605 REVERSE LENGTH=157 62 7e-11
>AT4G01150.1 | chr4:493692-494668 FORWARD LENGTH=165
Length = 164
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 84/91 (92%)
Query: 18 DELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTG 77
+ELI DLK KWD +ENKSTVL Y GGAI+A+WLSS++VGA+NSVPLLPK MELVGLGYTG
Sbjct: 74 NELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTG 133
Query: 78 WFVYRYLLFKESRKELADDVDSLKKRIAGTE 108
WFVYRYLLFK SRKELA+D++SLKK+IAG+E
Sbjct: 134 WFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
>AT4G38100.1 | chr4:17887033-17888177 REVERSE LENGTH=194
Length = 193
Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 19 ELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGW 78
E + D+K D ++L Y GAI+AL+L+S IV ++ ++PL PK ME+VGLGYT W
Sbjct: 105 EFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLW 161
Query: 79 FVYRYLLFKESRKELADDVDSLKKRIAGTE 108
F RYLLFK +R+EL V +KK++ G++
Sbjct: 162 FTTRYLLFKRNREELKTKVSEIKKQVLGSD 191
>AT2G46820.1 | chr2:19243729-19244870 FORWARD LENGTH=175
Length = 174
Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 58/89 (65%)
Query: 20 LIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGWF 79
+++ + W+ V++K + + A ++ALW S+ ++ A++ +PL+P +ELVG+GYTGWF
Sbjct: 86 IVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWF 145
Query: 80 VYRYLLFKESRKELADDVDSLKKRIAGTE 108
Y+ L+FK R+ L + V S K I G+
Sbjct: 146 TYKNLVFKPDREALFEKVKSTYKDILGSS 174
>AT1G52220.1 | chr1:19453770-19454605 REVERSE LENGTH=157
Length = 156
Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 19 ELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTGW 78
+++ ++ WD E++ ++ I+ALW S ++ A++ +P++ ELVG+ ++ W
Sbjct: 68 DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127
Query: 79 FVYRYLLFKESRKELADDVDSLKKRIA 105
F YRYLLFK R+EL+ V KK +A
Sbjct: 128 FTYRYLLFKPDRQELSKIV---KKSVA 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,977,636
Number of extensions: 67154
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 4
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)