BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0727500 Os02g0727500|AK121427
         (135 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16810.1  | chr1:5756150-5756694 FORWARD LENGTH=145            139   4e-34

>AT1G16810.1 | chr1:5756150-5756694 FORWARD LENGTH=145
          Length = 144

 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 102/144 (70%), Gaps = 9/144 (6%)

Query: 1   MSEYQNVVGGRLKLKGKALDVKEGGVXXXXXXXQHREESSEAGHGELHQGGSSEVPA--- 57
           MS Y NV+GG+LKLKGKALDVK GGV       +  E++ +    EL +G S+E      
Sbjct: 1   MSAYDNVIGGKLKLKGKALDVKAGGVKKKKKHKRQEEQALKITDHELIEGESTEALGKLI 60

Query: 58  ---DPNDELTEADKMGEEGNLQ---GDYDHLTPAERRYMEQKQKIDMHKLAKVANKSHRD 111
              + ++E+  ++K  E+  LQ    D DHLTPAERRY+EQKQ++D+ KLAK ANKSHR+
Sbjct: 61  EGEEGDEEMNRSEKASEDAKLQQQLDDDDHLTPAERRYIEQKQRLDVQKLAKEANKSHRN 120

Query: 112 RIQDFNQYLANLSEHYDIPKVGPG 135
           RI+DFNQYLAN+SEHYDIPKVGPG
Sbjct: 121 RIEDFNQYLANMSEHYDIPKVGPG 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,949,205
Number of extensions: 114478
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 106 (45.4 bits)