BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0726400 Os02g0726400|AK101892
(303 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26300.1 | chr1:9096023-9099746 REVERSE LENGTH=317 193 8e-50
AT1G69030.1 | chr1:25947429-25949262 REVERSE LENGTH=318 188 3e-48
AT3G24820.1 | chr3:9062717-9064366 REVERSE LENGTH=187 100 1e-21
AT3G49800.1 | chr3:18471957-18473676 REVERSE LENGTH=429 53 2e-07
AT5G65910.1 | chr5:26361592-26363341 REVERSE LENGTH=433 51 9e-07
>AT1G26300.1 | chr1:9096023-9099746 REVERSE LENGTH=317
Length = 316
Score = 193 bits (491), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 162/268 (60%), Gaps = 22/268 (8%)
Query: 2 DLWERARAFAGEAAKRSQELSAEAAKRSSALVSETAKKSKEI----------------FS 45
DLW+RA++FA EA K+SQ ++ ++ LV+ETAKKSKE+ +
Sbjct: 3 DLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVA 62
Query: 46 ETATKSREIAAEATKQADLLAGQIKRLSTDLXXXXXXXXXXXXXXXXXXXDAAELERYGI 105
ETA KS+E AAEA+K+AD + + + AEL +G+
Sbjct: 63 ETAKKSKEFAAEASKKADQFKVAALKQADQIQNIKSIADIIGTGTGSGSGSEAELLEFGV 122
Query: 106 TEDLREFVKGMTISTFRDFPLQDEP-EMSDVPT-VSNVRQDLNEWQARHATLVLSAVKEI 163
T+DLREF +G+T +TF+ FP QD+ E+SDV T SNVR+DL++WQ RHATLVL++VK+I
Sbjct: 123 TDDLREFAEGLTSATFQAFPDQDQGDEVSDVITNASNVRKDLSDWQERHATLVLTSVKQI 182
Query: 164 SKFRYELCPRYMKERKFWRVYFLLVNNYTSLYENKYFEELXXXXXXXXXXXXXXXTETSQ 223
SK RYELCPR+MKER+FWR+YF LV+ + S YE KY EEL T +
Sbjct: 183 SKLRYELCPRFMKERRFWRIYFTLVSTHVSPYERKYMEELKTKGEHGNEEAKKAPA-TGE 241
Query: 224 ATTAEHKDMKVQSKTSTSTNPEHDLDVF 251
T E K++ ++ +TST+++ E DLD F
Sbjct: 242 TETVE-KNVAIR-RTSTASS-EQDLDTF 266
>AT1G69030.1 | chr1:25947429-25949262 REVERSE LENGTH=318
Length = 317
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 144/228 (63%), Gaps = 26/228 (11%)
Query: 2 DLWERARAFAGEAAKRSQELSAEAAKRSSA-LVSETAKKSKEI----------------F 44
DLW+RA++FA EAAK+SQ ++ +++ + LV+ETAKKSKE
Sbjct: 3 DLWKRAKSFAEEAAKKSQTITLQSSSTTFVNLVTETAKKSKEFALEASKKADSINVSEFV 62
Query: 45 SETATKSREIAAEATKQADLL-------AGQIKRLSTDLXXXXXXXXXXXXXXXXXXXDA 97
+ETA KS+E AAE + +AD L A QI+ + +
Sbjct: 63 AETAKKSKEFAAEVSTKADQLKVVALKQADQIQNIKSIADIIPGGLGGSGSGGGGSEISE 122
Query: 98 AELERYGITEDLREFVKGMTISTFRDFPLQDEP-EMSDVPT-VSNVRQDLNEWQARHATL 155
+EL +GIT+DLREFVKG+T +TF+ FP QDE E+SD+ T SNVR+DL+EWQ RHATL
Sbjct: 123 SELVSFGITDDLREFVKGLTSATFQAFPEQDESSEVSDLETSASNVRKDLSEWQERHATL 182
Query: 156 VLSAVKEISKFRYELCPRYMKERKFWRVYFLLVNNYTSLYENKYFEEL 203
VL +VK+ISK RYELCPR MKER+FWR+YF LV+ + + YE KY EEL
Sbjct: 183 VLGSVKQISKLRYELCPRVMKERRFWRIYFTLVSTHVAPYERKYMEEL 230
>AT3G24820.1 | chr3:9062717-9064366 REVERSE LENGTH=187
Length = 186
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 10/106 (9%)
Query: 101 ERYGITEDLREFVKGMTISTFRDFPLQDEPEMSDVPTV----------SNVRQDLNEWQA 150
E G+T++L + V+ TI TF++F L+DE E V + +NV++DL++WQ
Sbjct: 37 EILGVTDELIDHVRSFTIDTFKNFSLEDEEEEVSVNPLGDEDNGMSSSANVKKDLSDWQE 96
Query: 151 RHATLVLSAVKEISKFRYELCPRYMKERKFWRVYFLLVNNYTSLYE 196
+HA LVLS KE+S+ R++LCPR +KE +FWR+YF LV + YE
Sbjct: 97 KHAVLVLSKSKELSQLRFKLCPRVLKEHQFWRIYFQLVRKIVAKYE 142
>AT3G49800.1 | chr3:18471957-18473676 REVERSE LENGTH=429
Length = 428
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 96 DAAELERYGITEDLREFVKGMTIS--TFRDFPLQDEPEMSDVPTVSNVRQDLNEWQARHA 153
D A G+TE++ F + + + T+ DFP DE + ++ + Q HA
Sbjct: 156 DVAIGNAIGVTEEVVLFARDLALHPETWLDFPFPDE-------DDNFDDFEMTDAQYEHA 208
Query: 154 TLVLSAVKEISKFRYELCPRYMKERKFWRVYFLLVNNYTSLYE 196
V + ++ R ELCP YM E FWR+YF+LV+ S ++
Sbjct: 209 LAVENLASSLAALRIELCPAYMSEYCFWRIYFVLVHPIFSKHD 251
>AT5G65910.1 | chr5:26361592-26363341 REVERSE LENGTH=433
Length = 432
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 96 DAAELERYGITEDLREFVKGMTISTFRDFPLQDEPEMSDVPTVSNVRQDLNEWQARHATL 155
D + + G+TE+L FVK + + P S +L + Q HA
Sbjct: 136 DPKDYDVIGVTEELVAFVKDLAM-----HPETWLDFPLPDDDDSFDDFELADAQYEHALA 190
Query: 156 VLSAVKEISKFRYELCPRYMKERKFWRVYFLLVN 189
V ++ R ELCP YM E FWR+YF+LV+
Sbjct: 191 VERLAPSLASLRIELCPEYMTENCFWRIYFVLVH 224
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,876,984
Number of extensions: 116953
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 6
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)