BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0722700 Os02g0722700|J100047H11
(52 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309 90 2e-19
AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316 88 9e-19
AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287 76 4e-15
AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284 72 8e-14
AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299 64 1e-11
>AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309
Length = 308
Score = 90.1 bits (222), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/48 (85%), Positives = 46/48 (95%)
Query: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
EDMMRGKPGYEHLNEPLHILVEAELP+EI+D RL+QAR+IL+DLL PV
Sbjct: 213 EDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPV 260
>AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316
Length = 315
Score = 88.2 bits (217), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/48 (81%), Positives = 46/48 (95%)
Query: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
E+MMRGKPGYEHLNEPLHILVEAELP+EI+D RL+QAR+IL+DLL P+
Sbjct: 219 EEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 266
>AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287
Length = 286
Score = 75.9 bits (185), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
ED +RG+PGYEHLNE LHIL+EA+LP I++ RL QA++I+E+LLKPV
Sbjct: 189 EDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPV 236
>AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284
Length = 283
Score = 71.6 bits (174), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 44/48 (91%)
Query: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
E+ ++GKPGYEHLNE LHIL+EA+LP++I+D +L QA++I+E+L+KPV
Sbjct: 188 EEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPV 235
>AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299
Length = 298
Score = 64.3 bits (155), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 39/48 (81%)
Query: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
E+ ++GKPGYEHL EPLH+L+EAELP +II++RL A LE LLKP+
Sbjct: 200 EEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPM 247
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.146 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,100,834
Number of extensions: 30035
Number of successful extensions: 68
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 5
Length of query: 52
Length of database: 11,106,569
Length adjustment: 25
Effective length of query: 27
Effective length of database: 10,421,169
Effective search space: 281371563
Effective search space used: 281371563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)