BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0720300 Os02g0720300|AK102281
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04550.1 | chr2:1588538-1589838 FORWARD LENGTH=258 273 1e-73
AT3G23610.3 | chr3:8478280-8479651 FORWARD LENGTH=229 84 6e-17
AT3G06110.2 | chr3:1843517-1844577 FORWARD LENGTH=168 75 3e-14
AT3G55270.1 | chr3:20496775-20499408 FORWARD LENGTH=785 64 7e-11
AT5G23720.1 | chr5:7998309-8002594 FORWARD LENGTH=930 57 1e-08
>AT2G04550.1 | chr2:1588538-1589838 FORWARD LENGTH=258
Length = 257
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 181/272 (66%), Gaps = 19/272 (6%)
Query: 1 MRKRERENPCEICGHYHNSEEGERCGVCGHRSGPMAGE---PPATLDPAFPTEVLKDFLF 57
MRKRERENPC ICGHYH EEGE CGVCGH P++ + P AFP+E+L +FL+
Sbjct: 1 MRKRERENPCSICGHYHKYEEGEVCGVCGH-CMPVSSDTVAPQQVHVSAFPSEILPEFLY 59
Query: 58 LGSYNNASRSEVLKTLSITHILNTVPDCQNLYRNSFTYHCIQDERSLDFDGANRFLEQCE 117
LGSY+NASRSE+LKT I+ +LNTVP CQNLYRNSFTYH + +E+ L FD A +FL+QCE
Sbjct: 60 LGSYDNASRSELLKTQGISRVLNTVPMCQNLYRNSFTYHGLDNEKVLQFDDAIKFLDQCE 119
Query: 118 RETSRVLVHCMSGKNRSAAIVIGYLMKSRGWRLSQSYQWVKDRRPQVQLTDASQNQLVEY 177
++ +RVLVHCMSGK+RS A+V+ YLMK +GWRL++S+QWVK RRP ++ QL E+
Sbjct: 120 KDKARVLVHCMSGKSRSPAVVVAYLMKRKGWRLAESHQWVKQRRPSTDISPEFYQQLQEF 179
Query: 178 EQKLFGPNVGAPAQSSVPTESFRPLGFGFPKPAGDIQAPVFNQQPVPSIFERVNPSNIPS 237
EQ +FG + S++ GFGFPK QAPVFN P SIF S P
Sbjct: 180 EQGIFGSEM----MSAMNINDAPTFGFGFPKIDNQAQAPVFNNAPTSSIFSSPASSIPPQ 235
Query: 238 NFTFGAMEANTPMDDNGAPAPTS-GDNPMDSS 268
FTFGA TP P PT+ GD MD S
Sbjct: 236 EFTFGA----TP------PKPTTGGDIAMDGS 257
>AT3G23610.3 | chr3:8478280-8479651 FORWARD LENGTH=229
Length = 228
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 14/139 (10%)
Query: 56 LFLGSYNNASRSEVLKTLSITHILNTVPDCQNLYRNSFTYHCI----QDERSLD--FDGA 109
L+LGS AS VLK+ ++THIL + + + F Y + +++ +L+ FD
Sbjct: 58 LYLGSVAAASNKNVLKSYNVTHILTVASSLRPAHPDDFVYKVVRVVDKEDTNLEMYFDEC 117
Query: 110 NRFLEQCERETSRVLVHCMSGKNRSAAIVIGYLMKSRGWRLSQSYQWVKDRRPQV----- 164
F+++ +R+ VLVHC GK+RS IV+ YLMK G L+Q+ Q VK +RP
Sbjct: 118 VDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLMKKHGMTLAQALQHVKSKRPVASPNAG 177
Query: 165 ---QLTDASQNQLVEYEQK 180
QL D ++ V E+K
Sbjct: 178 FIRQLQDLEKSMQVVVEEK 196
>AT3G06110.2 | chr3:1843517-1844577 FORWARD LENGTH=168
Length = 167
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 56 LFLGSYNNASRSEVLKTLSITHILNTVPDCQNLYRNSFTYHCIQ------DERSLDFDGA 109
LF+GS A+ + LK+ +ITH+L Y + F Y I+ + ++ FD
Sbjct: 32 LFIGSVAEANNKDFLKSSNITHVLTVAVALAPPYPDDFVYKVIEVVDRSETDLTVYFDEC 91
Query: 110 NRFLEQCERETSRVLVHCMSGKNRSAAIVIGYLMKSRGWRLSQSYQWVKDRRPQVQLTDA 169
F++Q + VLVHC G +RS IV+ YLMK G S++ + V+ RR Q
Sbjct: 92 YSFIDQAIQSGGGVLVHCFMGMSRSVTIVVAYLMKKHGMGFSKAMELVRSRRHQAYPNPG 151
Query: 170 SQNQLVEYEQKLFG 183
+QL ++E+ + G
Sbjct: 152 FISQLQQFEKSIQG 165
>AT3G55270.1 | chr3:20496775-20499408 FORWARD LENGTH=785
Length = 784
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 52 LKDFLFLGSYNNASRSEVLKTLSITHILNTVP-DCQNLYRNSFTYHCI-------QDERS 103
+ D +++G A +LK ITHILN V C +++ F Y + +D S
Sbjct: 153 VADHIYVGGDAVAKDKSILKNNGITHILNCVGFICPEYFKSDFCYRSLWLQDSPSEDITS 212
Query: 104 LDFDGANRFLEQCERETSRVLVHCMSGKNRSAAIVIGYLMKSRGWRLSQSYQWVKDRR 161
+ +D + F E ++ R+ VHC G +RS ++VI YLM G ++Q+VK R
Sbjct: 213 ILYDVFDYF-EDVREQSGRIFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKSAR 269
>AT5G23720.1 | chr5:7998309-8002594 FORWARD LENGTH=930
Length = 929
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 51 VLKDFLFLGSYNNASRSEVLKTLSITHIL----NTVPDCQNLYRNSFTYH--CIQDERSL 104
++++ LF+G A L+ L ITH+L N + Y + F Y I D+
Sbjct: 706 MIQENLFIGGGLAARSIYTLQHLGITHVLCLCANEIGQSDTQYPDLFEYQNFSITDDEDS 765
Query: 105 D----FDGANRFLEQCERETSRVLVHCMSGKNRSAAIVIGYLMKSRGWRLSQSYQWVKDR 160
+ F A F++ E ++LVHC G++RSA +V+ YLM + L +++ ++
Sbjct: 766 NIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLMLQKKLTLLEAWSKLRKV 825
Query: 161 RPQVQLTDASQNQLVEYEQKLFG 183
+ Q D L+ ++K G
Sbjct: 826 HRRAQPNDGFARILINLDKKCHG 848
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,548,473
Number of extensions: 295174
Number of successful extensions: 747
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 5
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)