BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0719700 Os02g0719700|AK119930
         (213 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12060.1  | chr1:4076334-4076981 FORWARD LENGTH=216             71   4e-13

>AT1G12060.1 | chr1:4076334-4076981 FORWARD LENGTH=216
          Length = 215

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%)

Query: 64  FRGHLVRRHAAAVRGADDEATXXXXXXXXQETVDAVRGDERERARFSEALMAVLLRLDAV 123
           +R + +R     +   + EA         QETVDA+R DE+ER R +E LMA+LL+LD+V
Sbjct: 61  YRSYRIRNLYKKISSINREANRVQSIIQRQETVDAIRSDEKERLRMNETLMALLLKLDSV 120

Query: 124 PGYYPXXXXXXXXXXXXXXGLQEVFDAVLAAPD 156
           PG  P              G+QE+ D++    D
Sbjct: 121 PGLDPTIREARRKVSRKIVGMQEILDSISETKD 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,589,025
Number of extensions: 52237
Number of successful extensions: 40
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)