BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0717900 Os02g0717900|AK069653
         (196 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13070.1  | chr5:4148216-4149062 FORWARD LENGTH=184            198   2e-51

>AT5G13070.1 | chr5:4148216-4149062 FORWARD LENGTH=184
          Length = 183

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 9/181 (4%)

Query: 4   YTQEHVYRHPWDRVTAAAWRKFTDPASRTALSHVADVHTLHRRVDPEAGRLQAARSITVX 63
           Y QEHVY+HPW+RV+AA+WRKF DP ++  LSH+ +V TL+R++D E G+L   R++T+ 
Sbjct: 5   YRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRALTIH 64

Query: 64  XXXXXXXXXXXXXXXXXXXXXXXXCHCVETSLVDAPRRAMDVVVRNVSLRGLIEVEERST 123
                                   CHCVE+++VD   R+M +  +N+SL+  IEVEER  
Sbjct: 65  APGPWFLHRIIGQDI---------CHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIR 115

Query: 124 YRPHPERPEEWTQFRQETTIRCRPLSALAAVAEKVETRCAERFLQNSAKGREVVERICRY 183
           Y PHP+ P  WT   QET+IR +PLSALA++AEKVE +CAE+F+QNSAKGREV+ERIC+Y
Sbjct: 116 YDPHPDNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKY 175

Query: 184 L 184
           +
Sbjct: 176 M 176



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,180,582
Number of extensions: 95912
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)